View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6020_high_13 (Length: 484)

Name: NF6020_high_13
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6020_high_13
NF6020_high_13
[»] chr5 (15 HSPs)
chr5 (230-467)||(32075535-32075767)
chr5 (327-467)||(31005338-31005478)
chr5 (163-229)||(1396153-1396219)
chr5 (163-228)||(20655049-20655114)
chr5 (163-230)||(2398940-2399007)
chr5 (163-230)||(10729440-10729507)
chr5 (163-230)||(34107336-34107403)
chr5 (163-229)||(16526305-16526371)
chr5 (163-221)||(33375928-33375986)
chr5 (163-229)||(38246864-38246930)
chr5 (163-228)||(20874852-20874917)
chr5 (163-216)||(25099248-25099301)
chr5 (163-216)||(25158338-25158391)
chr5 (163-228)||(34110816-34110881)
chr5 (163-228)||(40177205-40177270)
[»] chr4 (17 HSPs)
chr4 (25-216)||(22289967-22290157)
chr4 (21-213)||(33690278-33690471)
chr4 (163-230)||(16904950-16905017)
chr4 (177-229)||(18209689-18209741)
chr4 (163-230)||(44376077-44376144)
chr4 (163-226)||(46256198-46256261)
chr4 (163-230)||(52434788-52434855)
chr4 (188-230)||(35760770-35760812)
chr4 (163-229)||(39058356-39058422)
chr4 (163-229)||(47142799-47142865)
chr4 (163-228)||(12090459-12090524)
chr4 (163-228)||(30824922-30824987)
chr4 (188-229)||(31965968-31966009)
chr4 (163-228)||(33139471-33139536)
chr4 (163-228)||(37590804-37590869)
chr4 (163-228)||(37651830-37651895)
chr4 (188-229)||(53143261-53143302)
[»] chr6 (12 HSPs)
chr6 (54-229)||(15432336-15432511)
chr6 (163-229)||(1405562-1405628)
chr6 (163-229)||(3593057-3593123)
chr6 (163-228)||(13533931-13533996)
chr6 (177-229)||(162668-162720)
chr6 (163-229)||(2266940-2267006)
chr6 (163-229)||(12597264-12597330)
chr6 (163-216)||(6300721-6300774)
chr6 (163-216)||(6307531-6307584)
chr6 (163-228)||(33646106-33646171)
chr6 (188-228)||(8539742-8539782)
chr6 (188-228)||(28099597-28099637)
[»] chr7 (17 HSPs)
chr7 (79-204)||(21680989-21681114)
chr7 (83-230)||(21651462-21651609)
chr7 (28-213)||(21713499-21713688)
chr7 (163-229)||(16376544-16376610)
chr7 (25-103)||(40674298-40674376)
chr7 (163-228)||(13786334-13786399)
chr7 (163-231)||(42242151-42242219)
chr7 (163-230)||(21804570-21804637)
chr7 (163-230)||(27903415-27903482)
chr7 (163-230)||(33916945-33917012)
chr7 (25-103)||(21314280-21314358)
chr7 (163-229)||(40969055-40969121)
chr7 (163-228)||(21670145-21670210)
chr7 (188-229)||(31373645-31373686)
chr7 (161-230)||(32661031-32661100)
chr7 (163-228)||(38163339-38163404)
chr7 (188-228)||(21342012-21342052)
[»] scaffold0019 (2 HSPs)
scaffold0019 (44-216)||(177839-178010)
scaffold0019 (156-204)||(149046-149094)
[»] chr8 (13 HSPs)
chr8 (163-230)||(28583019-28583086)
chr8 (163-229)||(11725354-11725420)
chr8 (163-229)||(39997855-39997921)
chr8 (30-103)||(18850765-18850838)
chr8 (163-231)||(32110858-32110926)
chr8 (163-230)||(18175545-18175612)
chr8 (163-229)||(995814-995880)
chr8 (163-229)||(10478101-10478167)
chr8 (163-229)||(30473883-30473949)
chr8 (163-228)||(6299020-6299085)
chr8 (163-228)||(15961296-15961361)
chr8 (163-228)||(24409040-24409105)
chr8 (188-228)||(23353622-23353662)
[»] chr3 (16 HSPs)
chr3 (163-230)||(6460166-6460233)
chr3 (163-229)||(36076453-36076519)
chr3 (163-228)||(4584434-4584499)
chr3 (163-228)||(26948962-26949027)
chr3 (163-230)||(38653925-38653992)
chr3 (188-230)||(5561551-5561593)
chr3 (163-229)||(12264364-12264430)
chr3 (163-229)||(43363610-43363676)
chr3 (163-228)||(1941720-1941785)
chr3 (163-228)||(3898586-3898651)
chr3 (163-228)||(34121519-34121584)
chr3 (163-228)||(49672726-49672791)
chr3 (188-228)||(21098493-21098533)
chr3 (188-228)||(40014653-40014693)
chr3 (25-96)||(46921552-46921624)
chr3 (163-231)||(49506346-49506414)
[»] chr2 (8 HSPs)
chr2 (163-229)||(8700425-8700491)
chr2 (163-229)||(19596362-19596428)
chr2 (163-230)||(18351715-18351782)
chr2 (163-230)||(27944794-27944861)
chr2 (163-229)||(6120716-6120782)
chr2 (188-229)||(20545014-20545055)
chr2 (163-228)||(41664674-41664739)
chr2 (163-228)||(44902245-44902310)
[»] chr1 (12 HSPs)
chr1 (163-228)||(1231960-1232025)
chr1 (188-230)||(9216220-9216262)
chr1 (163-229)||(34888685-34888751)
chr1 (163-221)||(35614231-35614289)
chr1 (163-228)||(4266545-4266610)
chr1 (163-228)||(18706509-18706574)
chr1 (188-229)||(18855232-18855273)
chr1 (163-228)||(29942182-29942247)
chr1 (163-228)||(31018200-31018265)
chr1 (163-228)||(38913747-38913812)
chr1 (188-228)||(2951366-2951406)
chr1 (161-229)||(29387886-29387954)
[»] scaffold0515 (1 HSPs)
scaffold0515 (188-228)||(6061-6101)
[»] scaffold0306 (1 HSPs)
scaffold0306 (188-228)||(6071-6111)
[»] scaffold0031 (1 HSPs)
scaffold0031 (163-229)||(46438-46504)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 230 - 467
Target Start/End: Complemental strand, 32075767 - 32075535
Alignment:
Q  230 acctcacaatgttgtagatgatcttaaataaaataaaaaatgcatggttttcttatctaattgtgaaattttgtgatattaactaaattgtgtatgacag 329  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32075767 acctcacaatgttgtagatgatcttaaataaaa-----aatgcatggttttcttatctaattgtgaaattttgtgatattaactaaattgtgtatgacag 32075673  T
Q  330 aaaatggtgacaaacgtgtatgttatattcctggaatttcgccaacgcgcctagctaatttcgctctaaacgatgatagtaaccgaagcaagcaaatgat 429  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32075672 aaaatggtgacaaacgtgtatgttatattcctggaatttcgtcaacgcgcctagctgatttcgctctaaacgatgatagtaaccgaagcaagcaaatgat 32075573  T
Q  430 gcaatattttttaaaaggttttgaatggattcacaaag 467  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32075572 gcaatattttttaaaaggttttgaatggattcacaaag 32075535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 327 - 467
Target Start/End: Original strand, 31005338 - 31005478
Alignment:
Q  327 cagaaaatggtgacaaacgtgtatgttatattcctggaatttcgccaacgcgcctagctaatttcgctctaaacgatgatagtaaccgaagcaagcaaat 426  Q
    |||||||||||||  ||||| || |||||||||||||||||||  |||||||||||||  ||||| ||||||| |||||||| | ||||||||||| |||    
T  31005338 cagaaaatggtgatgaacgtataagttatattcctggaatttcctcaacgcgcctagccgatttccctctaaaagatgatagcagccgaagcaagcgaat 31005437  T
Q  427 gatgcaatattttttaaaaggttttgaatggattcacaaag 467  Q
    |||||||     | | ||||||||| |||||||||||||||    
T  31005438 gatgcaaatgactatgaaaggttttcaatggattcacaaag 31005478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 1396153 - 1396219
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||||| |||||    
T  1396153 tttgtttttgtctgctacatctgcaatgtatatgacccgtgcggcagcacgggtggaaaatatagtt 1396219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 20655114 - 20655049
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  20655114 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 20655049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 2399007 - 2398940
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  2399007 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 2398940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 10729507 - 10729440
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  10729507 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 10729440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 34107403 - 34107336
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  34107403 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 34107336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 16526371 - 16526305
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  16526371 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 16526305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 33375928 - 33375986
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaa 221  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| ||||    
T  33375928 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaa 33375986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 38246930 - 38246864
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  38246930 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 38246864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 20874852 - 20874917
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  20874852 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 20874917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 25099301 - 25099248
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggt 216  Q
    |||||||||| || |||||| | | ||||||||||||||||| |||||||||||    
T  25099301 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggt 25099248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 25158391 - 25158338
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggt 216  Q
    |||||||||| || |||||| | | ||||||||||||||||| |||||||||||    
T  25158391 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggt 25158338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 34110816 - 34110881
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  34110816 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 34110881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 40177205 - 40177270
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  40177205 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 40177270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 22290157 - 22289967
Alignment:
Q  25 gatggtgtttgcattgatagtacttcagatgtagttttcaaagaaactttccacaatgtgtagacatgaaaaacttcaaatataattgtatttattagta 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  22290157 gatggtttttgcattgatagtacttcagatgtagttttcaaagaaactttccacaatgtgtagacataaaaaaatacaaatataattgtatttattagta 22290058  T
Q  125 taacattaagattttaagatgggtatgtaatatgtcattttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggt 216  Q
    |||  ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||    
T  22290057 taatgttaagattttaagat-ggtatgcaatatgtcattttgtttttgccttctacattttcaatgtatatgactcgtgcggcagcacgggt 22289967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 33690278 - 33690471
Alignment:
Q  21 tgaggatggtgtttgcattgatagt--acttcagatgtagttttcaaagaaactttccacaatgtgtagacatgaaaaacttcaaatataattgtattta 118  Q
    |||||||| | ||||||||||||||  |||||| | |||||||||||||||  ||||  |||||| || |||||||   ||||||||||||||| ||| |    
T  33690278 tgaggatgatctttgcattgatagtgtacttcaaacgtagttttcaaagaatatttctgcaatgtataaacatgaattccttcaaatataattgcattaa 33690377  T
Q  119 ttagtataacattaagattttaagatgggtatgtaatatgtcattttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacg 213  Q
    |||  ||||| ||||  ||||||| | ||||| ||| |||||||||||||||| ||| ||||||||||||| |||||||| | ||| ||||||||    
T  33690378 ttatcataacgttaaagttttaagcttggtatataa-atgtcattttgtttttacctactacattttcgatatatatgactcctgcagcagcacg 33690471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 16905017 - 16904950
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  16905017 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 16904950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 18209689 - 18209741
Alignment:
Q  177 ctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||  ||||||||||||||||| ||||||||||| |||| |||||||    
T  18209689 ctacattttgaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 18209741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 44376144 - 44376077
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| ||  |||||||||    
T  44376144 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggacgatctagtta 44376077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 46256198 - 46256261
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatcta 226  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| ||||    
T  46256198 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtcta 46256261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 52434788 - 52434855
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  52434788 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 52434855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 35760770 - 35760812
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||    
T  35760770 atgtatatgactcgtgcggcagcacgggtggaaaatctagtta 35760812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 39058422 - 39058356
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||| ||| ||||||||||||    
T  39058422 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacaggtggaaaatctagtt 39058356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 47142865 - 47142799
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || |||||| | | |||||||||||| |||| ||||||||||| |||| |||||||    
T  47142865 tttgtttttgtctactacatctacaatgtatatgaccagtgcggcagcacgggtggaaagtctagtt 47142799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 12090524 - 12090459
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  12090524 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 12090459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 30824987 - 30824922
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  30824987 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 30824922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 31966009 - 31965968
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    ||||||||||||||||| ||||||||||| |||| |||||||    
T  31966009 atgtatatgacccgtgcggcagcacgggtggaaagtctagtt 31965968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 33139536 - 33139471
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  33139536 tttgtttttgtctactaaatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 33139471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 37590869 - 37590804
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||| ||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  37590869 tttgattttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 37590804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 37651830 - 37651895
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  37651830 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 37651895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 53143302 - 53143261
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    ||||||||||||||||| |||||||||||  |||||||||||    
T  53143302 atgtatatgacccgtgcggcagcacgggtgaaaaatctagtt 53143261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 4e-73; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 54 - 229
Target Start/End: Complemental strand, 15432511 - 15432336
Alignment:
Q  54 tgtagttttcaaagaaactttccacaatgtgtagacatgaaaaacttcaaatataattgtatttattagtataacattaagattttaagatgggtatgta 153  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  15432511 tgtaattttcaaagaaactttccacgatgtgtagacatgaaaaacttccaatataattgtatttattaggataacattaagattttaagttgggtatgta 15432412  T
Q  154 atatgtcattttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||    
T  15432411 atatgtcactttgtttttgccttctacattttcgatgtatatgacccgtgcggccgcacgggtagaaagtctagtt 15432336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 1405628 - 1405562
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||  || |||||| | | ||||||||||||||||| ||||||||||| ||||||||||||    
T  1405628 tttgtttttatctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaaatctagtt 1405562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 3593057 - 3593123
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  3593057 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 3593123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 13533931 - 13533996
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||  || |||||| | | ||||||||||||||||| ||||||||||| |||||||||||    
T  13533931 tttgtttttatctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaaatctagt 13533996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 162720 - 162668
Alignment:
Q  177 ctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||  ||||||||||||||||| ||||||||||| |||| |||||||    
T  162720 ctacattttgaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 162668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 2266940 - 2267006
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  2266940 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 2267006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 12597330 - 12597264
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  12597330 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 12597264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 6300774 - 6300721
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggt 216  Q
    ||||||||||||| ||| || | | ||||||||||||||||| |||||||||||    
T  6300774 tttgtttttgcctactagatatacaatgtatatgacccgtgcggcagcacgggt 6300721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 6307584 - 6307531
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggt 216  Q
    ||||||||||||| ||| || | | ||||||||||||||||| |||||||||||    
T  6307584 tttgtttttgcctactagatatacaatgtatatgacccgtgcggcagcacgggt 6307531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 33646106 - 33646171
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  33646106 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 33646171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 8539742 - 8539782
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
T  8539742 atgtatatgacccgtgcggcagcacgggtggaaagtctagt 8539782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 28099637 - 28099597
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
T  28099637 atgtatatgacccgtgcggcagcacgggtggaaagtctagt 28099597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 21680989 - 21681114
Alignment:
Q  79 aatgtgtagacatgaaaaacttcaaatataattgtatttattagtataacattaagattttaagatgggtatgtaatatgtcattttgtttttgccttct 178  Q
    |||||||| |||||| ||||||||||||||||||||||||||  ||||||||||| ||| |||| |||||||||  ||| | ||||| |||||| || ||    
T  21680989 aatgtgtaaacatgagaaacttcaaatataattgtatttattcttataacattaaaattataagttgggtatgtgctatataattttatttttgtctact 21681088  T
Q  179 acattttcgatgtatatgacccgtgc 204  Q
    |||||| |||||||||||||||||||    
T  21681089 acatttacgatgtatatgacccgtgc 21681114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 21651462 - 21651609
Alignment:
Q  83 tgtagacatgaaaaacttcaaatataattgtatttattagtataacattaagattttaagatgggtatgtaatatgtcattttgtttttgccttctacat 182  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||| ||| ||| | |||||| || || ||  | |||    
T  21651462 tgtaaacatgagaaacttcaaatataattgtatttattattataacattaaaattataagttgggtaagtactatctaattttgcttctgtctattgcat 21651561  T
Q  183 tttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    || | ||||||||||||| ||  | | ||||||||||  |||||||||    
T  21651562 ttacaatgtatatgacccatgttgtatcacgggtagaccatctagtta 21651609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 28 - 213
Target Start/End: Original strand, 21713499 - 21713688
Alignment:
Q  28 ggtgtttgcattgatagtacttcagatgtagttttcaaagaaactttcc--acaatgtgtagacatgaaaaacttcaaatataat--tgtatttattagt 123  Q
    |||||||||||| |||||||||   ||||||| |  ||||||| ||| |  | |||||||| |||||  ||||||||||||||||  ||||||||||| |    
T  21713499 ggtgtttgcatttatagtactttgaatgtagtgtataaagaaatttttcgaagaatgtgtaaacatgggaaacttcaaatataatattgtatttattatt 21713598  T
Q  124 ataacattaagattttaagatgggtatgtaatatgtcattttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacg 213  Q
    |||||||||| ||| ||| || |||||||| ||| | |||||| ||||  || |||||| | || |||||||||||| ||| | ||||||    
T  21713599 ataacattaaaattataaaattggtatgtactatataattttgcttttatctactacatctacggtgtatatgacccatgcggtagcacg 21713688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 16376610 - 16376544
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  16376610 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 16376544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 40674376 - 40674298
Alignment:
Q  25 gatggtgtttgcattgatagtacttcagatgtagttttcaaagaaactttccacaatgtgtagacatgaaaaacttcaa 103  Q
    |||||||||||||||||| || ||||  ||||||| || ||||||| |||||  |||| ||||||| ||||||||||||    
T  40674376 gatggtgtttgcattgatggttcttcgaatgtagtgtttaaagaaattttccgaaatgcgtagacacgaaaaacttcaa 40674298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 13786334 - 13786399
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  13786334 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 13786399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 42242219 - 42242151
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagttac 231  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||||    
T  42242219 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagttac 42242151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 21804637 - 21804570
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  21804637 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 21804570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 27903482 - 27903415
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    |||||||||| || |||||| | | || |||||||||||||| ||||||||||| |||| ||||||||    
T  27903482 tttgtttttgtctactacatctacaatatatatgacccgtgcggcagcacgggtggaaagtctagtta 27903415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 33917012 - 33916945
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  33917012 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 33916945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 21314358 - 21314280
Alignment:
Q  25 gatggtgtttgcattgatagtacttcagatgtagttttcaaagaaactttccacaatgtgtagacatgaaaaacttcaa 103  Q
    ||||||||||||||||||||| ||||  ||||||| || ||||||| ||| |  |||| ||||||| |||||| |||||    
T  21314358 gatggtgtttgcattgatagttcttcgaatgtagtgtttaaagaaatttttcgaaatgcgtagacacgaaaaatttcaa 21314280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 40969055 - 40969121
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    ||||||| || || |||||| | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  40969055 tttgtttgtgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 40969121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 21670145 - 21670210
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || |||||| | | |||||||||||| |||| ||||||||||| |||| ||||||    
T  21670145 tttgtttttgtctactacatctacaatgtatatgacctgtgcggcagcacgggtggaaagtctagt 21670210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 31373645 - 31373686
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    ||||||||||||||||| ||||||||||| |||| |||||||    
T  31373645 atgtatatgacccgtgcggcagcacgggtggaaagtctagtt 31373686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 32661031 - 32661100
Alignment:
Q  161 attttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    |||||| ||||| || ||||| || | ||||||||||| ||||| ||||||||||||||  |||||||||    
T  32661031 attttgcttttgtctactacacttacaatgtatatgactcgtgcggcagcacgggtagacgatctagtta 32661100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 38163404 - 38163339
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  38163404 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 38163339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 21342012 - 21342052
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
T  21342012 atgtatatgacccgtgcggcagcacgggtggaaagtctagt 21342052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 44 - 216
Target Start/End: Complemental strand, 178010 - 177839
Alignment:
Q  44 gtacttcagatgtagttttcaaagaaactttccacaatgtgtagacatgaaaaacttcaaatataattgtatttattagtataacattaagattttaaga 143  Q
    |||||||| | |||||||||||| ||| ||||  |||||| || |||||||   | ||||||||||||| ||| ||||  || || ||||  || ||||     
T  178010 gtacttcaaacgtagttttcaaacaaattttctgcaatgtataaacatgaattccctcaaatataattgcattaattatcatgacgttaaagttctaagc 177911  T
Q  144 tgggtatgtaatatgtcattttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggt 216  Q
    |  |||| ||| |||||||||||||||||||| ||||||||||||| |||||||||||||  |||||||||||    
T  177910 ttcgtatataa-atgtcattttgtttttgcctgctacattttcgatatatatgacccgtgtggcagcacgggt 177839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 149094 - 149046
Alignment:
Q  156 atgtcattttgtttttgccttctacattttcgatgtatatgacccgtgc 204  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||||||    
T  149094 atgtcattttgttttcgcctgctacattttcgatatatatgacccgtgc 149046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 28583019 - 28583086
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    |||||||||  || |||||| | | ||||||||||||||||| ||||||||||| |||||||||||||    
T  28583019 tttgtttttatctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaaatctagtta 28583086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 11725354 - 11725420
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  11725354 tttgtttttgtctactacatctacaatgtatatgacccgtgcagcagcacgggtggaaagtctagtt 11725420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 39997855 - 39997921
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  39997855 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaattctagtt 39997921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 18850838 - 18850765
Alignment:
Q  30 tgtttgcattgatagtacttcagatgtagttttcaaagaaactttccacaatgtgtagacatgaaaaacttcaa 103  Q
    |||||||||||||||| ||||  ||||||| || ||||||| |||||| |||| |||||||| ||| |||||||    
T  18850838 tgtttgcattgatagttcttcgaatgtagtgtttaaagaaattttccaaaatgcgtagacataaaagacttcaa 18850765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 32110926 - 32110858
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagttac 231  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||||    
T  32110926 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagttac 32110858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 18175545 - 18175612
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  18175545 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 18175612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 995880 - 995814
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  995880 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 995814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 10478101 - 10478167
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  10478101 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 10478167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 30473949 - 30473883
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  30473949 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 30473883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 6299085 - 6299020
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  6299085 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 6299020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 15961296 - 15961361
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  15961296 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 15961361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 24409040 - 24409105
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||  || |||||| | | ||||||||||||||||| ||| |||||||||||| ||||||    
T  24409040 tttgtttttatctactacatctacaatgtatatgacccgtgcggcaacacgggtagaaagtctagt 24409105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 23353662 - 23353622
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
T  23353662 atgtatatgacccgtgcggcagcacgggtggaaagtctagt 23353622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 6460233 - 6460166
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  6460233 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 6460166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 36076519 - 36076453
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  36076519 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 36076453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 4584499 - 4584434
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  4584499 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 4584434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 26948962 - 26949027
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  26948962 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 26949027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 38653992 - 38653925
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  38653992 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 38653925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 5561593 - 5561551
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    ||||||||||||||||| ||||||||||||||  |||||||||    
T  5561593 atgtatatgacccgtgcggcagcacgggtagacgatctagtta 5561551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 12264364 - 12264430
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  12264364 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 12264430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 43363676 - 43363610
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  43363676 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 43363610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 1941785 - 1941720
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  1941785 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 1941720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 3898586 - 3898651
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  3898586 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 3898651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 34121519 - 34121584
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  34121519 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 34121584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 49672726 - 49672791
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  49672726 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 49672791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 21098493 - 21098533
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
T  21098493 atgtatatgacccgtgcggcagcacgggtggaaagtctagt 21098533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 40014693 - 40014653
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
T  40014693 atgtatatgacccgtgcggcagcacgggtggaaagtctagt 40014653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 46921624 - 46921552
Alignment:
Q  25 gatggtgtttgcattgatagtacttcagatgt-agttttcaaagaaactttccacaatgtgtagacatgaaaa 96  Q
    ||||||||||||||||||||||||||  |||| ||| || ||| |||  ||||| |||||||||||| |||||    
T  46921624 gatggtgtttgcattgatagtacttcgaatgtaagtgtttaaaaaaaaattccaaaatgtgtagacacgaaaa 46921552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 49506414 - 49506346
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagttac 231  Q
    |||||||||| || ||| || | | ||||||||||||||||| |||| |||||| |||| |||||||||    
T  49506414 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagtacgggtggaaagtctagttac 49506346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 8700425 - 8700491
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  8700425 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 8700491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 19596428 - 19596362
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || |||||| | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  19596428 tttgtttttgtctactacatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 19596362  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 18351715 - 18351782
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  18351715 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 18351782  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 27944861 - 27944794
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||||    
T  27944861 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtta 27944794  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 6120716 - 6120782
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  6120716 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 6120782  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 20545014 - 20545055
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    ||||||||||||||||| ||||||||||| |||| |||||||    
T  20545014 atgtatatgacccgtgcggcagcacgggtggaaagtctagtt 20545055  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 41664674 - 41664739
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  41664674 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 41664739  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 44902245 - 44902310
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  44902245 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 44902310  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 1231960 - 1232025
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| |||| | ||||||||||||||||| ||||||||||| |||| ||||||    
T  1231960 tttgtttttgtctactatatttacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 1232025  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 9216220 - 9216262
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagtta 230  Q
    ||||||||||||||||| ||||||||||| |||| ||||||||    
T  9216220 atgtatatgacccgtgcggcagcacgggtggaaagtctagtta 9216262  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 34888751 - 34888685
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  34888751 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 34888685  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 35614231 - 35614289
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaa 221  Q
    |||||||||| || |||||||| | ||||||||||||||||| | ||||||||| ||||    
T  35614231 tttgtttttgtctactacatttacaatgtatatgacccgtgcggtagcacgggtggaaa 35614289  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 4266545 - 4266610
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  4266545 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 4266610  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 18706574 - 18706509
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || |||||| | | ||||||||||| ||||| ||||||||||| |||| ||||||    
T  18706574 tttgtttttgtctactacatctacaatgtatatgactcgtgcggcagcacgggtggaaagtctagt 18706509  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 18855273 - 18855232
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    ||||||||||||||||| ||||||||||| |||| |||||||    
T  18855273 atgtatatgacccgtgcggcagcacgggtggaaagtctagtt 18855232  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 29942182 - 29942247
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  29942182 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 29942247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 31018265 - 31018200
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  31018265 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 31018200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 38913812 - 38913747
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| ||||||    
T  38913812 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 38913747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 2951406 - 2951366
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
T  2951406 atgtatatgacccgtgcggcagcacgggtggaaagtctagt 2951366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 29387954 - 29387886
Alignment:
Q  161 attttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||||| || ||||| || | ||||||||||||||||| |||| |||||| ||  ||||||||    
T  29387954 attttgtttttgtctactacacttacaatgtatatgacccgtgcggcagtacgggtggacgatctagtt 29387886  T

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Target: scaffold0515 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 6101 - 6061
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  6101 atgtatatgacccgtgcggcagcacgggtggaaaatctagt 6061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 6111 - 6071
Alignment:
Q  188 atgtatatgacccgtgccgcagcacgggtagaaaatctagt 228  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  6111 atgtatatgacccgtgcggcagcacgggtggaaaatctagt 6071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 46438 - 46504
Alignment:
Q  163 tttgtttttgccttctacattttcgatgtatatgacccgtgccgcagcacgggtagaaaatctagtt 229  Q
    |||||||||| || ||| || | | ||||||||||||||||| ||||||||||| |||| |||||||    
T  46438 tttgtttttgtctactatatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 46504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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