View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6020_high_17 (Length: 441)

Name: NF6020_high_17
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6020_high_17
NF6020_high_17
[»] chr1 (8 HSPs)
chr1 (111-382)||(15642221-15642499)
chr1 (1-55)||(15642111-15642165)
chr1 (385-441)||(15642534-15642590)
chr1 (385-441)||(44913188-44913244)
chr1 (385-436)||(12035629-12035680)
chr1 (385-431)||(33721019-33721065)
chr1 (395-441)||(36806700-36806746)
chr1 (385-441)||(2044476-2044532)
[»] scaffold0182 (1 HSPs)
scaffold0182 (385-441)||(26410-26466)
[»] chr8 (9 HSPs)
chr8 (385-441)||(4125030-4125086)
chr8 (385-441)||(7839259-7839315)
chr8 (385-425)||(19715748-19715788)
chr8 (385-439)||(15683008-15683062)
chr8 (385-441)||(12958091-12958147)
chr8 (388-438)||(40320178-40320228)
chr8 (385-441)||(2744012-2744068)
chr8 (385-437)||(30056011-30056063)
chr8 (385-441)||(30936083-30936139)
[»] chr7 (10 HSPs)
chr7 (385-441)||(29428798-29428854)
chr7 (387-441)||(20207578-20207632)
chr7 (385-431)||(46373752-46373798)
chr7 (388-441)||(24172291-24172344)
chr7 (389-437)||(11486754-11486802)
chr7 (385-441)||(29059884-29059940)
chr7 (385-441)||(31492182-31492238)
chr7 (385-441)||(35707925-35707981)
chr7 (385-431)||(13254117-13254163)
chr7 (385-421)||(19477275-19477311)
[»] chr5 (7 HSPs)
chr5 (385-441)||(5123504-5123560)
chr5 (385-441)||(2798321-2798377)
chr5 (385-441)||(2804488-2804544)
chr5 (385-441)||(10592006-10592062)
chr5 (385-441)||(31113413-31113469)
chr5 (385-430)||(36212975-36213020)
chr5 (385-441)||(25983744-25983800)
[»] chr4 (10 HSPs)
chr4 (385-441)||(9012349-9012405)
chr4 (385-441)||(14854684-14854740)
chr4 (385-441)||(31307072-31307128)
chr4 (385-441)||(33529336-33529392)
chr4 (385-441)||(45994601-45994657)
chr4 (385-424)||(46016228-46016267)
chr4 (384-436)||(13686680-13686732)
chr4 (385-441)||(35972422-35972478)
chr4 (385-441)||(38766168-38766224)
chr4 (385-441)||(51626312-51626368)
[»] scaffold0009 (1 HSPs)
scaffold0009 (385-431)||(27241-27287)
[»] chr3 (5 HSPs)
chr3 (394-431)||(15283159-15283196)
chr3 (385-440)||(21223461-21223516)
chr3 (388-441)||(38331210-38331263)
chr3 (385-441)||(20861327-20861383)
chr3 (385-441)||(30995971-30996027)
[»] chr2 (6 HSPs)
chr2 (388-441)||(34386565-34386618)
chr2 (385-441)||(5394475-5394531)
chr2 (385-441)||(17981577-17981632)
chr2 (385-441)||(25423823-25423879)
chr2 (385-436)||(7020371-7020422)
chr2 (387-436)||(26296440-26296489)
[»] chr6 (1 HSPs)
chr6 (385-436)||(12836908-12836959)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 111 - 382
Target Start/End: Original strand, 15642221 - 15642499
Alignment:
Q  111 gagtacagttttcaaagtatagataatatcaattctttcccaaagtcatccaattatatat------acaaatgagtagttgagaaatatttctaattta 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||| |||| ||||||||| ||    
T  15642221 gagtacagttttcaaagtatagataatatcaattctttcccaaagtcatccaattatatattatcatacaaatgagtagttgtgaaacatttctaatata 15642320  T
Q  205 gaagag--ttcaaatttgaaaggattaaactagatgagaaatatccctgatttggattcattcacactaatattttgtttttgtagcatactcatgattg 302  Q
    ||||||  |||||||| |||| |||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15642321 gaagagagttcaaattagaaaagattaaaccaaatgagaaata-ccctgatttggattcattcacactaatattttgtttttgtagcatactcatgattg 15642419  T
Q  303 gatcaattgagttcacatttgctttagatccctnnnnnnngaaacgtcttgacccactaatacccagctaatattgcaca 382  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  15642420 gatcaattgagttcacatttgctttagatccctaaaaatagaaacgtcttgacccactaatacccagctaatattgcaca 15642499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15642111 - 15642165
Alignment:
Q  1 atgaattcaaaatatttgtaactcgaattgatcgattttatcacaaaacacagtg 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15642111 atgaattcaaaatatttgtaactcgaattgatcgattttatcacaaaacacagtg 15642165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 15642534 - 15642590
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  15642534 agggagagtttgccgcccatttgggtcccacaatgctcgagagattattctccgcag 15642590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 44913188 - 44913244
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||    
T  44913188 agggagagcttgccgcccatctgggtcccacaatgctcgagagattagtctctgcag 44913244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 436
Target Start/End: Original strand, 12035629 - 12035680
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctc 436  Q
    ||||||||  |||||||||||||| |||||||||||||||| ||||| ||||    
T  12035629 agggagagtctgccgcccatttgggtcccacaatgctcgagggattagtctc 12035680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 33721019 - 33721065
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagatta 431  Q
    |||||||| |||||| ||||||||||||||||| | |||||||||||    
T  33721019 agggagagtttgccgtccatttggatcccacaaggttcgagagatta 33721065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 36806700 - 36806746
Alignment:
Q  395 tgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    |||||||||||||| | |||||||||||||| ||||| |||||||||    
T  36806700 tgccgcccatttgggttccacaatgctcgagggattagtctctgcag 36806746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 2044476 - 2044532
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    |||||||| || ||||| |||||| | ||||||||||| |||||||| |||||||||    
T  2044476 agggagagattaccgcctatttgggttccacaatgctcaagagattagtctctgcag 2044532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 26410 - 26466
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||| |||||||||||||| |||||||||| ||||||||||| |||| ||||    
T  26410 agggagagcctgccgcccatttgggtcccacaatgttcgagagattagtctccgcag 26466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 4125086 - 4125030
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||| |||| ||||    
T  4125086 agggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcag 4125030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 7839315 - 7839259
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||| |||| ||||    
T  7839315 agggagagcatgccgcccatttgggtcccacaatgctcgagggattagtctccgcag 7839259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 19715788 - 19715748
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgag 425  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  19715788 agggagagcttgccgcccatttgggtcccacaatgctcgag 19715748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 15683008 - 15683062
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgc 439  Q
    ||||||||| |||||||||||| | |||||||||||||||| ||||| |||||||    
T  15683008 agggagagcctgccgcccatttaggtcccacaatgctcgagggattaatctctgc 15683062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 12958147 - 12958091
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||| || ||||||||||| |||||||||||||||| ||||| |||| ||||    
T  12958147 agggagagcctgtcgcccatttgggtcccacaatgctcgagggattagtctccgcag 12958091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 438
Target Start/End: Original strand, 40320178 - 40320228
Alignment:
Q  388 gagagcttgccgcccatttggatcccacaatgctcgagagattattctctg 438  Q
    ||||| |||||| | ||||||||||||| ||||||||||||||| ||||||    
T  40320178 gagagtttgccgtctatttggatcccacgatgctcgagagattagtctctg 40320228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 2744012 - 2744068
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||| || || |||||||| |||||||||||||||| ||||| |||| ||||    
T  2744012 agggagagcatgtcgtccatttgggtcccacaatgctcgagggattagtctccgcag 2744068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 437
Target Start/End: Complemental strand, 30056063 - 30056011
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctct 437  Q
    ||||||||| ||||| |||||||| | |||||||||||||| ||||| |||||    
T  30056063 agggagagcctgccgtccatttgggttccacaatgctcgagggattagtctct 30056011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 30936083 - 30936139
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||| |||||||||||||| ||| |||||| ||||| ||||| |||| ||||    
T  30936083 agggagagcctgccgcccatttgggtccgacaatgttcgagggattagtctccgcag 30936139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 29428854 - 29428798
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    |||||||| |||||| ||||||||||||||||||| ||||| ||||| |||||||||    
T  29428854 agggagagtttgccgaccatttggatcccacaatgttcgagggattagtctctgcag 29428798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 20207578 - 20207632
Alignment:
Q  387 ggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    |||||||||||||| ||||||||||| |||||||||||| ||||| |||| ||||    
T  20207578 ggagagcttgccgcgcatttggatcctacaatgctcgagggattagtctccgcag 20207632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 46373752 - 46373798
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagatta 431  Q
    ||||||||||||||||| |||||| || |||||||||||||||||||    
T  46373752 agggagagcttgccgcctatttgggtcacacaatgctcgagagatta 46373798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 441
Target Start/End: Original strand, 24172291 - 24172344
Alignment:
Q  388 gagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    |||||||||||||||| ||||||||||||||||||||  ||||| ||| |||||    
T  24172291 gagagcttgccgcccacttggatcccacaatgctcgaaggattagtctatgcag 24172344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 437
Target Start/End: Complemental strand, 11486802 - 11486754
Alignment:
Q  389 agagcttgccgcccatttggatcccacaatgctcgagagattattctct 437  Q
    |||||||||||||||||||| | ||||||||||| |||||||| |||||    
T  11486802 agagcttgccgcccatttgggttccacaatgctcaagagattagtctct 11486754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 29059884 - 29059940
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||| |||||||||||||| |||||||||||| ||| ||||| |||| ||||    
T  29059884 agggagagcctgccgcccatttgggtcccacaatgcttgagggattagtctccgcag 29059940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 31492182 - 31492238
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||| |||||||||||| | |||||||||||||||| ||||| |||| ||||    
T  31492182 agggagagcctgccgcccatttaggtcccacaatgctcgagggattagtctccgcag 31492238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 35707925 - 35707981
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||| |||||| ||||||| ||||| |||||||||||| ||||| |||||||||    
T  35707925 agggagaacttgcctcccatttagatcctacaatgctcgagggattagtctctgcag 35707981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 431
Target Start/End: Complemental strand, 13254163 - 13254117
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagatta 431  Q
    ||||||||| |||||||||||| | |||||||||||||||| |||||    
T  13254163 agggagagcctgccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 421
Target Start/End: Complemental strand, 19477311 - 19477275
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgct 421  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  19477311 agggagagcttgccggccatttgggtcccacaatgct 19477275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 5123560 - 5123504
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||| |||| ||||    
T  5123560 agggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcag 5123504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 2798377 - 2798321
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||||| |||||||||||| | | ||||||||| |||||||| |||||||||    
T  2798377 agggagagcttaccgcccatttggtttctacaatgctctagagattaatctctgcag 2798321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 2804544 - 2804488
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||||| |||||||||||| | | ||||||||| |||||||| |||||||||    
T  2804544 agggagagcttaccgcccatttggtttctacaatgctctagagattaatctctgcag 2804488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 10592006 - 10592062
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||  |||||||||||||  |||||||||||||||| ||||| |||||||||    
T  10592006 agggagagtctgccgcccatttgagtcccacaatgctcgagggattagtctctgcag 10592062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 31113413 - 31113469
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||| | |||||||||||||||||||||| |||||| ||||| |||| ||||    
T  31113413 agggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcag 31113469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 430
Target Start/End: Original strand, 36212975 - 36213020
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagatt 430  Q
    |||||||| ||||||||||||| | |||||||||||||||| ||||    
T  36212975 agggagagtttgccgcccatttaggtcccacaatgctcgagggatt 36213020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 25983744 - 25983800
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    |||||||||||||||||||||||  ||||| |||| ||||| ||||| |||| ||||    
T  25983744 agggagagcttgccgcccatttgagtcccataatgttcgagtgattagtctccgcag 25983800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 9012349 - 9012405
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||||| |||| ||||    
T  9012349 agggagagcttgccgcccacttgggtcccacaatgctcgagggattagtctccgcag 9012405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 14854684 - 14854740
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    |||||||||||||||||||||||| ||| ||||| |||||| ||||| |||||||||    
T  14854684 agggagagcttgccgcccatttgggtccaacaattctcgagggattagtctctgcag 14854740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 31307128 - 31307072
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||| |||| ||||    
T  31307128 agggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcag 31307072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 33529336 - 33529392
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    |||||||||||||||||||||||| ||||||||| || ||| ||||| |||| ||||    
T  33529336 agggagagcttgccgcccatttgggtcccacaatactggagggattagtctccgcag 33529392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 45994601 - 45994657
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||| || ||||||||||| || ||||||||||||||||||| |||| ||||    
T  45994601 agggagagcctgacgcccatttgggtctcacaatgctcgagagattagtctccgcag 45994657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 424
Target Start/End: Original strand, 46016228 - 46016267
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcga 424  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  46016228 agggagagcctgccgcccatttgggtcccacaatgctcga 46016267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 13686680 - 13686732
Alignment:
Q  384 aagggagagcttgccgcccatttggatcccacaatgctcgagagattattctc 436  Q
    ||||||||| |||||| |||||||| || ||||| ||||||||||||| ||||    
T  13686680 aagggagagtttgccgtccatttgggtctcacaaggctcgagagattagtctc 13686732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 35972422 - 35972478
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    |||||||| ||||||||||||||| |||||| ||| ||||| ||||| |||| ||||    
T  35972422 agggagagtttgccgcccatttgggtcccactatgttcgagggattagtctccgcag 35972478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 38766168 - 38766224
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||  |||||||||||||| || ||||||||||||| ||||| |||| ||||    
T  38766168 agggagagtctgccgcccatttgggtctcacaatgctcgagggattagtctccgcag 38766224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 51626368 - 51626312
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||  ||||| |||||||| ||||||| |||||||||||||| |||| ||||    
T  51626368 agggagagtctgccgtccatttgggtcccacagtgctcgagagattagtctccgcag 51626312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 431
Target Start/End: Complemental strand, 27287 - 27241
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagatta 431  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||||    
T  27287 agggagagcttgccgcccatttggatctcacgatgctcgagggatta 27241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 394 - 431
Target Start/End: Original strand, 15283159 - 15283196
Alignment:
Q  394 ttgccgcccatttggatcccacaatgctcgagagatta 431  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  15283159 ttgccgcccatttgggtcccacaatgctcgagagatta 15283196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 440
Target Start/End: Complemental strand, 21223516 - 21223461
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgca 440  Q
    |||||||||||| |||| |||| ||||||||||||||| ||| |||| ||||||||    
T  21223516 agggagagcttgtcgcctatttagatcccacaatgctcaagaaattagtctctgca 21223461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 441
Target Start/End: Original strand, 38331210 - 38331263
Alignment:
Q  388 gagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||||||||||||||| |||||||||| | ||| ||||| |||| ||||    
T  38331210 gagagcttgccgcccatttgggtcccacaatgtttgagggattagtctccgcag 38331263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 20861327 - 20861383
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||| |||||||||||||| | ||| |||||||||| ||||| |||| ||||    
T  20861327 agggagagcctgccgcccatttgggttccataatgctcgagggattagtctccgcag 20861383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 30996027 - 30995971
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||  |||||||||| ||| |||||||||||||||| ||||| |||| ||||    
T  30996027 agggagagtctgccgcccatctgggtcccacaatgctcgagggattagtctccgcag 30995971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 441
Target Start/End: Original strand, 34386565 - 34386618
Alignment:
Q  388 gagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    |||||||||||| | ||||||||| || |||||||||||||||| |||||||||    
T  34386565 gagagcttgccgtctatttggatctcataatgctcgagagattaatctctgcag 34386618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 5394475 - 5394531
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||| |||||||||||||| |||||||||||||| | ||||| |||| ||||    
T  5394475 agggagagcctgccgcccatttgggtcccacaatgctcgtgggattagtctccgcag 5394531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 17981577 - 17981632
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||||||||||||  |||||| |||||||||||||||||||||| |||| ||||    
T  17981577 agggagagcttgccgca-atttgggtcccacaatgctcgagagattagtctccgcag 17981632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 25423823 - 25423879
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcag 441  Q
    ||||||| | |||||||||||||| |||||||||||||||| ||||| |||| ||||    
T  25423823 agggagaacctgccgcccatttgggtcccacaatgctcgagggattagtctcagcag 25423879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 436
Target Start/End: Complemental strand, 7020422 - 7020371
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctc 436  Q
    ||||||| |||||||||||||||| ||| |||||||||||| ||||| ||||    
T  7020422 agggagaacttgccgcccatttgggtcctacaatgctcgagtgattagtctc 7020371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 26296440 - 26296489
Alignment:
Q  387 ggagagcttgccgcccatttggatcccacaatgctcgagagattattctc 436  Q
    |||||| |||||||||| ||| ||||||||| ||||||||||||| ||||    
T  26296440 ggagagtttgccgcccaattgaatcccacaaggctcgagagattagtctc 26296489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 436
Target Start/End: Complemental strand, 12836959 - 12836908
Alignment:
Q  385 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctc 436  Q
    |||||||||| ||||||||||||| |||||||||||| ||| ||||| ||||    
T  12836959 agggagagctcgccgcccatttgggtcccacaatgcttgagggattagtctc 12836908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University