View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6020_high_19 (Length: 413)

Name: NF6020_high_19
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6020_high_19
NF6020_high_19
[»] chr1 (14 HSPs)
chr1 (8-122)||(4015229-4015343)
chr1 (249-381)||(4570561-4570693)
chr1 (249-388)||(4015270-4015406)
chr1 (249-298)||(21855820-21855869)
chr1 (39-122)||(4570658-4570741)
chr1 (16-77)||(21855725-21855786)
chr1 (15-71)||(4017083-4017139)
chr1 (320-393)||(21855716-21855786)
chr1 (248-296)||(4017168-4017216)
chr1 (249-302)||(10218605-10218658)
chr1 (353-390)||(39379412-39379449)
chr1 (320-378)||(4017083-4017138)
chr1 (355-399)||(4366828-4366872)
chr1 (356-396)||(10218715-10218755)
[»] chr5 (3 HSPs)
chr5 (249-298)||(24331336-24331385)
chr5 (16-77)||(24331241-24331302)
chr5 (320-393)||(24331232-24331302)
[»] chr4 (3 HSPs)
chr4 (353-395)||(3561304-3561346)
chr4 (353-399)||(3565426-3565472)
chr4 (353-386)||(3557408-3557441)
[»] chr7 (7 HSPs)
chr7 (351-381)||(29880954-29880984)
chr7 (353-390)||(29431343-29431380)
chr7 (18-75)||(29866911-29866968)
chr7 (21-74)||(29880931-29880984)
chr7 (353-390)||(29884951-29884988)
chr7 (353-381)||(22021074-22021102)
chr7 (353-381)||(22036792-22036820)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 4015343 - 4015229
Alignment:
Q  8 gacatcatcagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttgagt 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4015343 gacaacatcagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttgagt 4015244  T
Q  108 ggtactataaactgg 122  Q
    |||||||||||||||    
T  4015243 ggtactataaactgg 4015229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 249 - 381
Target Start/End: Original strand, 4570561 - 4570693
Alignment:
Q  249 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgttctgcaat-attaatcaacaaccagaggtgagagttctcaacttgggtgg 347  Q
    ||||| ||||||||| |||||||||| || |||||||||||||||||||| ||| ||| |  |  || || | |||||| ||||||||||| ||||||||    
T  4570561 ctttggctttggatgtgataattcaaacgaaacttataaagtggtggcgtactgtaatcaagagacagcatc-agaggtcagagttctcaatttgggtgg 4570659  T
Q  348 tcgtgatgtttggagaaatattgaaagttttcct 381  Q
    |  |||||||||||||||||||||||||||||||    
T  4570660 tgatgatgtttggagaaatattgaaagttttcct 4570693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 388
Target Start/End: Complemental strand, 4015406 - 4015270
Alignment:
Q  249 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgttctg-caatattaatcaacaaccagaggtgagagttctcaacttgggtgg 347  Q
    ||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||  ||    |  |||| | |||| |||| |||||||||||||||||     
T  4015406 ctttgcctttggatgtgataattcaactggagcttataaagtggtggcgttctgtaaacgagagacaac-atcagatgtgaaagttctcaacttgggtg- 4015309  T
Q  348 tcgtgatgtttggagaaatattgaaagttttcctgttgttc 388  Q
       ||||||||||||||| ||||||||||||||||||||||    
T  4015308 --ttgatgtttggagaaacattgaaagttttcctgttgttc 4015270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 21855869 - 21855820
Alignment:
Q  249 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgt 298  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21855869 ctttgcctttggatgtgataattcaaccggaacttataaagtggtggcgt 21855820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 4570658 - 4570741
Alignment:
Q  39 ggtgttgatgtttggagaaacattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttgagtggtactataaactgg 122  Q
    |||| ||||||||||||||| |||||||||||||||  |||||||| |||| ||| ||||| ||||||||| ||| | ||||||    
T  4570658 ggtgatgatgtttggagaaatattgaaagttttcctactgttcttggccacaaacctgtgtatttgagtggcactgtgaactgg 4570741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 21855786 - 21855725
Alignment:
Q  16 cagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgtt 77  Q
    |||| |||| |||| ||||| |||||| |||||||||||||||||| |||||||||||||||    
T  21855786 cagaggtgagagttatcaacatgggtgatgatgtttggagaaacatcgaaagttttcctgtt 21855725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 4017139 - 4017083
Alignment:
Q  15 tcagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagtttt 71  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||| ||||| ||||||    
T  4017139 tcagaggtgaaagttctcaatttgggtgatgatgtttggagaaatattgacagtttt 4017083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 21855786 - 21855716
Alignment:
Q  320 cagaggtgagagttctcaacttgggtggtcgtgatgtttggagaaatattgaaagttttcctgttgttcctttt 393  Q
    |||||||||||||| ||||| |||||| |   |||||||||||||| || ||||||||||||||| ||||||||    
T  21855786 cagaggtgagagttatcaacatgggtgat---gatgtttggagaaacatcgaaagttttcctgttattcctttt 21855716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 4017216 - 4017168
Alignment:
Q  248 gctttgcctttggatgcgataattcaaccggaacttataaagtggtggc 296  Q
    ||||||| |||||||| ||||||||||| | ||||||||||||||||||    
T  4017216 gctttgcatttggatgtgataattcaactgcaacttataaagtggtggc 4017168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 10218605 - 10218658
Alignment:
Q  249 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgttctg 302  Q
    |||||| |||||||| | ||||||||||||||  | ||||||||||||||||||    
T  10218605 ctttgcatttggatgtgttaattcaaccggaagctttaaagtggtggcgttctg 10218658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 39379449 - 39379412
Alignment:
Q  353 atgtttggagaaatattgaaagttttcctgttgttcct 390  Q
    ||||||||||||||||||||||||| || |||||||||    
T  39379449 atgtttggagaaatattgaaagtttcccggttgttcct 39379412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 4017138 - 4017083
Alignment:
Q  320 cagaggtgagagttctcaacttgggtggtcgtgatgtttggagaaatattgaaagtttt 378  Q
    ||||||||| ||||||||| ||||||| |   |||||||||||||||||||| ||||||    
T  4017138 cagaggtgaaagttctcaatttgggtgat---gatgtttggagaaatattgacagtttt 4017083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 4366872 - 4366828
Alignment:
Q  355 gtttggagaaatattgaaagttttcctgttgttccttttcgtttg 399  Q
    ||||||||| ||||||||||||||||| |||||||| ||| ||||    
T  4366872 gtttggagagatattgaaagttttcctattgttcctcttcatttg 4366828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 10218715 - 10218755
Alignment:
Q  356 tttggagaaatattgaaagttttcctgttgttccttttcgt 396  Q
    |||||||||||||||||| ||||||||| ||||||| ||||    
T  10218715 tttggagaaatattgaaacttttcctgtggttccttatcgt 10218755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 24331385 - 24331336
Alignment:
Q  249 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgt 298  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24331385 ctttgcctttggatgtgataattcaaccggaacttataaagtggtggcgt 24331336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 24331302 - 24331241
Alignment:
Q  16 cagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgtt 77  Q
    |||| |||| |||| ||||| |||||| |||||||||||||||||| |||||||||||||||    
T  24331302 cagaggtgagagttatcaacatgggtgatgatgtttggagaaacatcgaaagttttcctgtt 24331241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 24331302 - 24331232
Alignment:
Q  320 cagaggtgagagttctcaacttgggtggtcgtgatgtttggagaaatattgaaagttttcctgttgttcctttt 393  Q
    |||||||||||||| ||||| |||||| |   |||||||||||||| || ||||||||||||||| ||||||||    
T  24331302 cagaggtgagagttatcaacatgggtgat---gatgtttggagaaacatcgaaagttttcctgttattcctttt 24331232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 353 - 395
Target Start/End: Complemental strand, 3561346 - 3561304
Alignment:
Q  353 atgtttggagaaatattgaaagttttcctgttgttccttttcg 395  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  3561346 atgtttggagaaatattgaaagttttcctattgttcctcttcg 3561304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 3565426 - 3565472
Alignment:
Q  353 atgtttggagaaatattgaaagttttcctgttgttccttttcgtttg 399  Q
    ||||||||||||||||||||||||| || | ||||||| ||||||||    
T  3565426 atgtttggagaaatattgaaagtttcccggctgttcctcttcgtttg 3565472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 386
Target Start/End: Original strand, 3557408 - 3557441
Alignment:
Q  353 atgtttggagaaatattgaaagttttcctgttgt 386  Q
    ||||||||||||||||||||||||| ||||||||    
T  3557408 atgtttggagaaatattgaaagtttccctgttgt 3557441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 381
Target Start/End: Original strand, 29880954 - 29880984
Alignment:
Q  351 tgatgtttggagaaatattgaaagttttcct 381  Q
    |||||||||||||||||||||||||||||||    
T  29880954 tgatgtttggagaaatattgaaagttttcct 29880984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 29431380 - 29431343
Alignment:
Q  353 atgtttggagaaatattgaaagttttcctgttgttcct 390  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  29431380 atgtttggagagatattgaaagtttccctgttgttcct 29431343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 29866911 - 29866968
Alignment:
Q  18 gatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctg 75  Q
    ||||||| ||||||||| || |||| ||||  ||||||||| ||||||||||||||||    
T  29866911 gatgtgagagttctcaatttcggtgatgatcgttggagaaatattgaaagttttcctg 29866968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 29880931 - 29880984
Alignment:
Q  21 gtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcct 74  Q
    |||| |||||||||  | |||| ||||||||||||||| |||||||||||||||    
T  29880931 gtgagagttctcaatcttggtgatgatgtttggagaaatattgaaagttttcct 29880984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 29884951 - 29884988
Alignment:
Q  353 atgtttggagaaatattgaaagttttcctgttgttcct 390  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  29884951 atgtttggagagatattgaaagttttccagttgttcct 29884988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Original strand, 22021074 - 22021102
Alignment:
Q  353 atgtttggagaaatattgaaagttttcct 381  Q
    |||||||||||||||||||||||||||||    
T  22021074 atgtttggagaaatattgaaagttttcct 22021102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Original strand, 22036792 - 22036820
Alignment:
Q  353 atgtttggagaaatattgaaagttttcct 381  Q
    |||||||||||||||||||||||||||||    
T  22036792 atgtttggagaaatattgaaagttttcct 22036820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University