View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6020_high_2 (Length: 869)

Name: NF6020_high_2
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6020_high_2
NF6020_high_2
[»] chr6 (17 HSPs)
chr6 (232-852)||(6177894-6178520)
chr6 (26-170)||(6178582-6178726)
chr6 (557-840)||(6174074-6174357)
chr6 (453-544)||(6174556-6174656)
chr6 (254-312)||(6171979-6172037)
chr6 (480-738)||(23012623-23012889)
chr6 (780-837)||(13782414-13782471)
chr6 (780-837)||(13789736-13789793)
chr6 (780-837)||(13803991-13804048)
chr6 (782-838)||(15576197-15576253)
chr6 (782-834)||(13194289-13194341)
chr6 (782-838)||(17858937-17858993)
chr6 (536-738)||(18967864-18968070)
chr6 (780-834)||(22727250-22727304)
chr6 (781-838)||(6091919-6091976)
chr6 (794-838)||(9395432-9395476)
chr6 (793-838)||(8037052-8037097)
[»] scaffold0074 (1 HSPs)
scaffold0074 (480-738)||(27350-27618)
[»] chr4 (10 HSPs)
chr4 (536-735)||(10427267-10427470)
chr4 (792-838)||(30797708-30797754)
chr4 (785-838)||(10450301-10450354)
chr4 (790-838)||(13553465-13553513)
chr4 (790-838)||(20717947-20717995)
chr4 (782-838)||(22219953-22220009)
chr4 (792-837)||(25367735-25367780)
chr4 (790-838)||(47023560-47023608)
chr4 (793-838)||(7023034-7023079)
chr4 (781-838)||(12805767-12805824)
[»] chr7 (20 HSPs)
chr7 (536-738)||(16183755-16183961)
chr7 (782-838)||(7143582-7143638)
chr7 (792-837)||(2352143-2352188)
chr7 (782-838)||(21544680-21544736)
chr7 (792-838)||(7152127-7152173)
chr7 (781-838)||(7494499-7494556)
chr7 (790-838)||(9687088-9687136)
chr7 (795-838)||(18497205-18497248)
chr7 (790-840)||(4091354-4091404)
chr7 (802-840)||(9071398-9071436)
chr7 (792-829)||(7325834-7325871)
chr7 (781-850)||(14074479-14074548)
chr7 (781-850)||(14384507-14384576)
chr7 (790-834)||(3401086-3401130)
chr7 (798-838)||(7776367-7776407)
chr7 (790-838)||(18494563-18494611)
chr7 (784-831)||(3094189-3094236)
chr7 (704-738)||(5102715-5102749)
chr7 (796-837)||(10925081-10925122)
chr7 (796-833)||(11466915-11466952)
[»] chr1 (10 HSPs)
chr1 (536-738)||(46191218-46191424)
chr1 (782-838)||(27682937-27682993)
chr1 (782-838)||(34522128-34522184)
chr1 (782-838)||(50048254-50048310)
chr1 (784-838)||(17836791-17836845)
chr1 (638-738)||(4130175-4130278)
chr1 (790-838)||(23224632-23224680)
chr1 (784-838)||(11768885-11768939)
chr1 (784-834)||(30676679-30676729)
chr1 (792-837)||(23420485-23420530)
[»] scaffold0171 (2 HSPs)
scaffold0171 (781-838)||(7365-7422)
scaffold0171 (788-848)||(22566-22626)
[»] chr3 (9 HSPs)
chr3 (591-697)||(24671187-24671293)
chr3 (454-554)||(34489587-34489693)
chr3 (613-735)||(31204893-31205014)
chr3 (781-848)||(25918085-25918152)
chr3 (536-697)||(4579078-4579240)
chr3 (489-574)||(34469925-34470012)
chr3 (794-837)||(8839674-8839717)
chr3 (792-837)||(26419997-26420042)
chr3 (785-834)||(33913400-33913449)
[»] chr8 (6 HSPs)
chr8 (782-834)||(13803097-13803149)
chr8 (782-835)||(12957567-12957620)
chr8 (781-837)||(26853617-26853673)
chr8 (782-838)||(32240454-32240510)
chr8 (791-846)||(28075666-28075721)
chr8 (796-837)||(18790068-18790109)
[»] chr2 (6 HSPs)
chr2 (778-838)||(41256204-41256265)
chr2 (782-838)||(31000612-31000668)
chr2 (792-837)||(17495995-17496040)
chr2 (793-834)||(23854055-23854096)
chr2 (782-823)||(27416083-27416124)
chr2 (604-737)||(30397034-30397170)
[»] chr5 (5 HSPs)
chr5 (782-838)||(11273684-11273740)
chr5 (782-838)||(16617447-16617503)
chr5 (782-837)||(24518959-24519014)
chr5 (782-838)||(20715843-20715899)
chr5 (782-836)||(16621469-16621523)
[»] scaffold0362 (1 HSPs)
scaffold0362 (784-834)||(9971-10021)
[»] scaffold0386 (2 HSPs)
scaffold0386 (790-838)||(7539-7587)
scaffold0386 (782-833)||(10553-10604)
[»] scaffold0108 (1 HSPs)
scaffold0108 (781-836)||(9909-9964)
[»] scaffold0103 (1 HSPs)
scaffold0103 (784-838)||(36494-36548)


Alignment Details
Target: chr6 (Bit Score: 511; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 232 - 852
Target Start/End: Complemental strand, 6178520 - 6177894
Alignment:
232 atctattgaagttcaatgaaagaatttcatccattcttgatccttaacaatcaagctaatatttccaacatatgaccaacattcaagaacaatgaaagat 331  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
6178520 atctattgaagttcaatgaaagaatttcatccattcttaatccttaacaatcaagctaatacttccaacatatgaccaacattcaagaacaatgaaagat 6178421  T
332 ttcttgtctttgatgagcatcttctataattcaaactannnnnnnn--cctttatccaattcttatgacatttttataaaatctttttaaagggtactaa 429  Q
    ||||||||||||||||||||||||||||||||||||||          || |||||||||||||||||||||||||||||||||||||||||||||||||    
6178420 ttcttgtctttgatgagcatcttctataattcaaactattttttttttcccttatccaattcttatgacatttttataaaatctttttaaagggtactaa 6178321  T
430 agattaataagatttaaccaaaagttttgcatgaaagacaagtgtcttgct----gtaaggaactattgtttacctctcctataaatcaagtttatttgc 525  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||    
6178320 agattaataagatttaaccaaatgttttgcatgaaagacaagtgtcttgctatatgtaaggaactattgtttacctctcctataaatcaagtttatttgc 6178221  T
526 accatttcaatcatcccataaaatagtaatacaacaataagaattagagtttatggaaagtgatcgaaaaatacaggaaggaaatagagtttctcctgta 625  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
6178220 accatttcaatcatcccataaaatagtaacacaacaacaagaattagagtttatggagagtgagcgaaaaatacaggaaggaaatagagtttctcctgta 6178121  T
626 aggtttcatctggtgttagtatttctctatttcaagagagaaggtaacttgtctatgcttttatttagagaggttttgtaatttctcccacttaataaaa 725  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6178120 aggtttcctctggtgttagtatttctctatttcaagagagaaggtaacttgtctatgcttttatttagagaggttttgtaatttctcccacttaataaaa 6178021  T
726 gttatctactcttacataccttgtggttttttcctccttatttgttgtggagttcctgatggatgaaattgacaagtgcatcaaatcgtaacaagtaaca 825  Q
     |||||||||||||||||||||||||||||||| ||||||||||||||||  || ||||||||| |||||||||||||||||||||||||||||||||||    
6178020 tttatctactcttacataccttgtggttttttcttccttatttgttgtgggatttctgatggatcaaattgacaagtgcatcaaatcgtaacaagtaaca 6177921  T
826 aagtagtaagtttttggtcttcacagg 852  Q
    ||||||||||||||| |||||||||||    
6177920 aagtagtaagttttttgtcttcacagg 6177894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 6178726 - 6178582
Alignment:
26 agggtgtttaccacttttcctttcatgaacaaaaaactaattatgggagataattattaattacacatttgaaaggataactacatacccaatagtgtgg 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6178726 agggtgtttaccacttttcctttcatgaacaaaaaactaattatgggagataattattaattacacatttgaaaggataactacatacccaatagtgtgg 6178627  T
126 tcaaggtgaaaaaacatatattttggctacgagaatacgtgttgg 170  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
6178626 tcaaggtgaaaaaacacatattttggctacgagaatacgtgttgg 6178582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 557 - 840
Target Start/End: Complemental strand, 6174357 - 6174074
Alignment:
557 caacaataagaattagagtttatggaaagtgatcgaaaaatacaggaaggaaatagagtttctcctgtaaggtttcatctggtgttagtatttctctatt 656  Q
    |||||| ||||||||||| ||  ||| |||||  |||||||| || ||||||||| |||||||||| ||||| ||| ||| || ||||||||||| ||||    
6174357 caacaacaagaattagagcttgcggatagtgagagaaaaatatagaaaggaaatatagtttctcctataaggattcttctagttttagtatttctttatt 6174258  T
657 tcaagagagaaggtaactt-gtctatgcttttatttagagaggttttgtaatttctcccacttaataaaagttatctactcttacataccttgtggtttt 755  Q
    ||||||||||||||||||| | || | ||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||  ||| ||||    
6174257 tcaagagagaaggtaactttgcctctacttgtatttagagaggtcttgtaatttctcccacttaatgaaagttat-tactcttacataccccgtgatttt 6174159  T
756 ttcctccttatttgttgtggagttcctgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttttt 840  Q
    ||| ||||||||||||||||  || ||||||||| |||||| ||||||||||||||||||| ||||| ||||||| |||||||||    
6174158 ttcttccttatttgttgtgggatttctgatggatcaaattggcaagtgcatcaaatcgtaaaaagtagcaaagtactaagttttt 6174074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 453 - 544
Target Start/End: Complemental strand, 6174656 - 6174556
Alignment:
453 gttttgcatgaaagacaagtgtcttgc----tgtaagga---actattgtttacctctcctataa--atcaagtttatttgcaccatttcaatcatccca 543  Q
    ||||||||||||| ||||||| |||||    ||||||||   |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
6174656 gttttgcatgaaacacaagtggcttgctatatgtaaggaactactattgtttacctctcctataaatatcaagtttatttgcaccatttcaatcatccca 6174557  T
544 t 544  Q
    |    
6174556 t 6174556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 6172037 - 6171979
Alignment:
254 aatttcatccattcttgatccttaacaatcaagctaatatttccaacatatgaccaaca 312  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||    
6172037 aatttcatccattcttaatccttaacaatcaaactaatttttccaacatatgaccaaca 6171979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 480 - 738
Target Start/End: Complemental strand, 23012889 - 23012623
Alignment:
480 tgtaaggaactattgtttacctctcctataaat--caagtttatttgcaccatttcaatcatcccataaaatagtaatacaacaataagaattagagttt 577  Q
    ||||||||| ||| | ||||||||| |||||||  |||| | |||||||||||||  |||||||||| || | |||| ||||||| ||||||||||| ||    
23012889 tgtaaggaaatatggattacctctcttataaataccaagatcatttgcaccatttttatcatcccatcaagttgtaacacaacaacaagaattagagctt 23012790  T
578 atggaaagt--gatcgaaaaatacaggaaggaaatagagtttctcctgtaaggtttcatctggtgttagtatttctctatttcaagagaga-ag---gta 671  Q
     | || |||  ||   ||||||| || ||||||||| ||| ||| ||||||||||||  |  ||| ||||||| |  |||||||||||||| ||   |||    
23012789 gttgagagttagagaaaaaaatatagaaaggaaatatagtctcttctgtaaggtttctccaagtgctagtattcccatatttcaagagagagagagagta 23012690  T
672 acttgtctatgcttttatttagagaggttttgtaatttctcccacttaataaaagttatctactctt 738  Q
    | |||||| |  || |||||| |||||| ||| |||||||| |||||| | |||||| |||||||||    
23012689 atttgtctctcattgtatttaaagaggtcttgaaatttctctcacttagtgaaagttctctactctt 23012623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 780 - 837
Target Start/End: Complemental strand, 13782471 - 13782414
Alignment:
780 cctgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtt 837  Q
    ||||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||    
13782471 cctgatggacgaaattgacaagtgcaccaaatcgtaacaattaataaagtagtaagtt 13782414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 780 - 837
Target Start/End: Complemental strand, 13789793 - 13789736
Alignment:
780 cctgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtt 837  Q
    ||||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||    
13789793 cctgatggacgaaattgacaagtgcaccaaatcgtaacaattaataaagtagtaagtt 13789736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 780 - 837
Target Start/End: Complemental strand, 13804048 - 13803991
Alignment:
780 cctgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtt 837  Q
    ||||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||    
13804048 cctgatggacgaaattgacaagtgcaccaaatcgtaacaattaataaagtagtaagtt 13803991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 782 - 838
Target Start/End: Complemental strand, 15576253 - 15576197
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||||| ||||||| |||||||||||||||||||||||||| |||||||| |||||    
15576253 tgatggacgaaattggcaagtgcatcaaatcgtaacaagtaataaagtagtcagttt 15576197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 834
Target Start/End: Complemental strand, 13194341 - 13194289
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaa 834  Q
    ||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||    
13194341 tgatggacgaaattggcaagtgcaccaaatcgtaacaagtaataaagtagtaa 13194289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 838
Target Start/End: Original strand, 17858937 - 17858993
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||||| |||||||||| ||||||||||| |||||||||||  |||||||||||||    
17858937 tgatggacgaaattgacatgtgcatcaaatagtaacaagtaattaagtagtaagttt 17858993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 536 - 738
Target Start/End: Original strand, 18967864 - 18968070
Alignment:
536 tcatcccataaaatagtaatacaacaataagaattagagtttatggaaagtgatcg-aaaaatacaggaaggaaatagagtttctcctgtaaggtttcat 634  Q
    ||||| ||| || |||||| ||||||| ||||||||||| || | || |||||  | ||||||| |   |||||||| |||||||| ||| |||||||      
18967864 tcatcacatcaagtagtaacacaacaacaagaattagagcttgttgagagtgagaggaaaaatataaagaggaaatatagtttctcttgtgaggtttctc 18967963  T
635 ctggtgttagtatttctctatttcaagagagaaggtaacttgtctatgcttttatttagagag--gttttgtaatt-tctcccacttaataaaagttatc 731  Q
    || |||||||||||   |||||||| |||||| | ||| |||||| | ||| |||||||||||  || |||||||| ||| ||||||| | |||||| ||    
18967964 ctagtgttagtattctcctatttcatgagagaggctaatttgtctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttttc 18968063  T
732 tactctt 738  Q
    |||||||    
18968064 tactctt 18968070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 780 - 834
Target Start/End: Complemental strand, 22727304 - 22727250
Alignment:
780 cctgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaa 834  Q
    |||||||||  ||||||||||||||| ||||| ||||||||||| ||||||||||    
22727304 cctgatggacaaaattgacaagtgcaccaaattgtaacaagtaataaagtagtaa 22727250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 781 - 838
Target Start/End: Original strand, 6091919 - 6091976
Alignment:
781 ctgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    |||||||| ||||||||||||||||| ||||||||| || ||| ||||||| ||||||    
6091919 ctgatggacgaaattgacaagtgcattaaatcgtaaaaaataataaagtagaaagttt 6091976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 794 - 838
Target Start/End: Original strand, 9395432 - 9395476
Alignment:
794 ttgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    |||||||||||| |||||||||||||||||  |||||||||||||    
9395432 ttgacaagtgcaacaaatcgtaacaagtaatgaagtagtaagttt 9395476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 793 - 838
Target Start/End: Complemental strand, 8037097 - 8037052
Alignment:
793 attgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    |||| ||||||||  |||||||||||||||| ||||||||||||||    
8037097 attggcaagtgcactaaatcgtaacaagtaataaagtagtaagttt 8037052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 480 - 738
Target Start/End: Complemental strand, 27618 - 27350
Alignment:
480 tgtaaggaactattgtttacctctcctataaat--caagtttatttgcac---catttcaa-tcatcccataaaatagtaatacaacaataagaattaga 573  Q
    ||||||||||||  | |||||||||||||||||  |||||| ||||||||   ||| |||  ||||| ||| ||||||||| ||||||| ||||||||||    
27618 tgtaaggaactaaggcttacctctcctataaatagcaagttcatttgcacaatcatctcatctcatcacatcaaatagtaacacaacaacaagaattaga 27519  T
574 gtttatggaaagtgatcg-aaaaatacaggaaggaaatagagtttctcctgtaaggtttcatctggtgttagtatttctctatttcaagagagaaggtaa 672  Q
    | || | || |||||  | ||||||| ||  |||||||| |||||||||||| |||||||  || |||||||||||   ||||||||||||||| |||||    
27518 gcttgttgagagtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagtgttagtattcacctatttcaagagagatggtaa 27419  T
673 cttgtctatgcttttatttagagag--gttttgtaatt-tctcccacttaataaaagttatctactctt 738  Q
     |||||| | ||| |||||||||||  || |||||||| ||| ||||||| | |||||| |||||||||    
27418 tttgtctctccttgtatttagagagaagtattgtaattgtcttccacttagtgaaagttctctactctt 27350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 536 - 735
Target Start/End: Original strand, 10427267 - 10427470
Alignment:
536 tcatcccataaaatagtaatacaacaataagaattagagtttatggaaagtgatcg-aaaaatacaggaaggaaatagagtttctcctgtaaggtttcat 634  Q
    ||||| ||| || |||||| ||||||| ||||||||||| || | || |||||  | ||||||| ||  |||||||| |||||||||||| |||||||      
10427267 tcatcacatcaagtagtaacacaacaacaagaattagagcttgttgagagtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctc 10427366  T
635 ctggtgttagtatttctctatttcaagagagaaggtaacttgtctatgcttttatttagagag--gttttgtaatt-tctcccacttaataaaagttatc 731  Q
    || |||||||||||   ||||||||||||||| ||||| |||||| | ||| |||||||||||  || |||||||| ||| ||||||| | |||||||||    
10427367 ctagtgttagtattctcctatttcaagagagagggtaatttgtctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttatc 10427466  T
732 tact 735  Q
    ||||    
10427467 tact 10427470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 792 - 838
Target Start/End: Complemental strand, 30797754 - 30797708
Alignment:
792 aattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||    
30797754 aattggcaagtgcatcaaatcgtaacaagtaataaagtagtaagttt 30797708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 785 - 838
Target Start/End: Original strand, 10450301 - 10450354
Alignment:
785 tggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    |||||||||||| |||||||| ||||||||||||| ||| ||||||||||||||    
10450301 tggatgaaattggcaagtgcaccaaatcgtaacaaataataaagtagtaagttt 10450354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 790 - 838
Target Start/End: Original strand, 13553465 - 13553513
Alignment:
790 gaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||||||    
13553465 gaaattgacaagtgtatcaaatcgtaataagtaataaagtagtaagttt 13553513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 790 - 838
Target Start/End: Complemental strand, 20717995 - 20717947
Alignment:
790 gaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||||||||    
20717995 gaaattggcaagtgcaccaaatcgtaacaagtaataaagtagtaagttt 20717947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 838
Target Start/End: Complemental strand, 22220009 - 22219953
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||||| ||||||||||||||||  ||||| |||||||||| ||||||||||||||    
22220009 tgatggacgaaattgacaagtgcactaaatcataacaagtaataaagtagtaagttt 22219953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 792 - 837
Target Start/End: Complemental strand, 25367780 - 25367735
Alignment:
792 aattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtt 837  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||||    
25367780 aattgacaagtgcaccaaatcgaaacaagtaataaagtagtaagtt 25367735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 790 - 838
Target Start/End: Original strand, 47023560 - 47023608
Alignment:
790 gaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||||| ||||| |||||||||||||||||||| || |||||||||||    
47023560 gaaattggcaagtacatcaaatcgtaacaagtaataaggtagtaagttt 47023608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 793 - 838
Target Start/End: Original strand, 7023034 - 7023079
Alignment:
793 attgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||| ||||||| ||||||||||||| ||| ||||||||||||||    
7023034 attgataagtgcaccaaatcgtaacaaataataaagtagtaagttt 7023079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 781 - 838
Target Start/End: Original strand, 12805767 - 12805824
Alignment:
781 ctgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    |||||| | |||||||  || |||| ||||||||||||||||| ||||||||||||||    
12805767 ctgatgaacgaaattggtaaatgcaccaaatcgtaacaagtaataaagtagtaagttt 12805824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 536 - 738
Target Start/End: Complemental strand, 16183961 - 16183755
Alignment:
536 tcatcccataaaatagtaatacaacaataagaattagagtttatggaaagtgatcg-aaaaatacaggaaggaaatagagtttctcctgtaaggtttcat 634  Q
    ||||| ||| || |||||| ||||||| ||||||||||| || | || |||||  | ||||||| ||  |||||||| |||||||||||| |||||||      
16183961 tcatcacatcaagtagtaacacaacaacaagaattagagcttgttgagagtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctc 16183862  T
635 ctggtgttagtatttctctatttcaagagagaaggtaacttgtctatgcttttatttag--agaggttttgtaatt-tctcccacttaataaaagttatc 731  Q
    || |||||||||||   ||||||||||||||| ||||| |||||| | ||| |||||||  |||||| |||||||| ||| ||||||| | |||||| ||    
16183861 ctagtgttagtattctcctatttcaagagagagggtaatttgtctctccttgtatttagagagaggtcttgtaattgtcttccacttagtgaaagttctc 16183762  T
732 tactctt 738  Q
    |||||||    
16183761 tactctt 16183755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 782 - 838
Target Start/End: Complemental strand, 7143638 - 7143582
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||    
7143638 tgatggatgaaattgacaagtgcaccaaatcgtaacaagtaataaagtagcaagttt 7143582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 792 - 837
Target Start/End: Original strand, 2352143 - 2352188
Alignment:
792 aattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtt 837  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
2352143 aattgacaagtgcatcaaatcgtaacaagtaataaagtagtaagtt 2352188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 782 - 838
Target Start/End: Original strand, 21544680 - 21544736
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||    
21544680 tgatggacgaaattggcaagtgcaccaaatcgtaacaagtaataaagtagtaagttt 21544736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 792 - 838
Target Start/End: Complemental strand, 7152173 - 7152127
Alignment:
792 aattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||    
7152173 aattgacaagtgcaccaaatcgtaacaagtaataaagtagtaagttt 7152127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 781 - 838
Target Start/End: Complemental strand, 7494556 - 7494499
Alignment:
781 ctgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    |||||||| ||||||| |||||||| ||||||||||||||||| ||| ||||||||||    
7494556 ctgatggacgaaattggcaagtgcaccaaatcgtaacaagtaataaattagtaagttt 7494499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 790 - 838
Target Start/End: Original strand, 9687088 - 9687136
Alignment:
790 gaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||||||    
9687088 gaaattgacaagtgtatcaaatcgtaataagtaataaagtagtaagttt 9687136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 795 - 838
Target Start/End: Complemental strand, 18497248 - 18497205
Alignment:
795 tgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
18497248 tgacaagtgcaccaaatcgtaacaagtaacaatgtagtaagttt 18497205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 790 - 840
Target Start/End: Original strand, 4091354 - 4091404
Alignment:
790 gaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttttt 840  Q
    ||||||| |||||| | ||||||||||||||||| ||||||||||||||||    
4091354 gaaattggcaagtgtaccaaatcgtaacaagtaataaagtagtaagttttt 4091404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 802 - 840
Target Start/End: Complemental strand, 9071436 - 9071398
Alignment:
802 tgcatcaaatcgtaacaagtaacaaagtagtaagttttt 840  Q
    |||||||||||||||||||||| ||||||||||||||||    
9071436 tgcatcaaatcgtaacaagtaaaaaagtagtaagttttt 9071398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 792 - 829
Target Start/End: Original strand, 7325834 - 7325871
Alignment:
792 aattgacaagtgcatcaaatcgtaacaagtaacaaagt 829  Q
    |||||||||||||||||||||||||||||||| |||||    
7325834 aattgacaagtgcatcaaatcgtaacaagtaataaagt 7325871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 781 - 850
Target Start/End: Complemental strand, 14074548 - 14074479
Alignment:
781 ctgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtttttggtcttcaca 850  Q
    |||||||| |||| ||  |||||||  |||||||||||||||| |||||||||||||| | |||||||||    
14074548 ctgatggacgaaactggaaagtgcacaaaatcgtaacaagtaataaagtagtaagtttatcgtcttcaca 14074479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 781 - 850
Target Start/End: Complemental strand, 14384576 - 14384507
Alignment:
781 ctgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtttttggtcttcaca 850  Q
    |||||||| |||| ||  |||||||  |||||||||||||||| |||||||||||||| | |||||||||    
14384576 ctgatggacgaaactggaaagtgcacaaaatcgtaacaagtaataaagtagtaagtttatcgtcttcaca 14384507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 790 - 834
Target Start/End: Complemental strand, 3401130 - 3401086
Alignment:
790 gaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaa 834  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||    
3401130 gaaattgacaagtgcacaaaatcgtaacaagtaataaagtagtaa 3401086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 798 - 838
Target Start/End: Original strand, 7776367 - 7776407
Alignment:
798 caagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    |||||||| |||||| |||||||||||||||||||||||||    
7776367 caagtgcaccaaatcttaacaagtaacaaagtagtaagttt 7776407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 790 - 838
Target Start/End: Original strand, 18494563 - 18494611
Alignment:
790 gaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||||| |||||||| ||||||||||||||||| || |||||||||||    
18494563 gaaattggcaagtgcaccaaatcgtaacaagtaataaggtagtaagttt 18494611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 784 - 831
Target Start/End: Complemental strand, 3094236 - 3094189
Alignment:
784 atggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtag 831  Q
    ||||| |||||||||||| ||| ||||||||||||||||| |||||||    
3094236 atggaggaaattgacaagagcaccaaatcgtaacaagtaataaagtag 3094189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 704 - 738
Target Start/End: Complemental strand, 5102749 - 5102715
Alignment:
704 taatttctcccacttaataaaagttatctactctt 738  Q
    |||||||||||||||| ||||||||||||||||||    
5102749 taatttctcccacttagtaaaagttatctactctt 5102715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 796 - 837
Target Start/End: Complemental strand, 10925122 - 10925081
Alignment:
796 gacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtt 837  Q
    |||||||||| ||||||||| ||||||| |||||||||||||    
10925122 gacaagtgcaccaaatcgtatcaagtaataaagtagtaagtt 10925081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 796 - 833
Target Start/End: Original strand, 11466915 - 11466952
Alignment:
796 gacaagtgcatcaaatcgtaacaagtaacaaagtagta 833  Q
    ||||||||||||||||||||| |||||| |||||||||    
11466915 gacaagtgcatcaaatcgtaagaagtaataaagtagta 11466952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 536 - 738
Target Start/End: Original strand, 46191218 - 46191424
Alignment:
536 tcatcccataaaatagtaatacaacaataagaattagagtttatggaaagtgatcg-aaaaatacaggaaggaaatagagtttctcctgtaaggtttcat 634  Q
    |||||| || || |||||| ||||||| ||||||||||| || | || |||||  | ||||||| ||  |||||||| |||||||||||| |||||||      
46191218 tcatccaatcaagtagtaacacaacaacaagaattagagcttgttgagagtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctc 46191317  T
635 ctggtgttagtatttctctatttcaagagagaaggtaacttgtctatgcttttatttagagag--gttttgtaatt-tctcccacttaataaaagttatc 731  Q
    || |||||||||||   ||||||||||||||| ||||| |||||| | ||| |||||||||||  || |||||||| ||| ||||||| | |||||| ||    
46191318 ctagtgttagtattctcctatttcaagagagagggtaatttgtctctccttctatttagagagaagtcttgtaattgtcttccacttagtgaaagttctc 46191417  T
732 tactctt 738  Q
    |||||||    
46191418 tactctt 46191424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 782 - 838
Target Start/End: Complemental strand, 27682993 - 27682937
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||||| |||||||||||||||| |||| |||||||||||| ||||||||||||||    
27682993 tgatggacgaaattgacaagtgcaccaaaccgtaacaagtaataaagtagtaagttt 27682937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 838
Target Start/End: Complemental strand, 34522184 - 34522128
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||||| ||||||| |||||||| ||||||||||||||||| ||| ||||||||||    
34522184 tgatggaagaaattggcaagtgcaccaaatcgtaacaagtaataaaatagtaagttt 34522128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 838
Target Start/End: Complemental strand, 50048310 - 50048254
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||||| ||||||| ||||||||||||||  |||||||||| ||||||||||||||    
50048310 tgatggacgaaattggcaagtgcatcaaattataacaagtaataaagtagtaagttt 50048254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 784 - 838
Target Start/End: Original strand, 17836791 - 17836845
Alignment:
784 atggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||| ||||||| |||||||| |||||| |||||||||| ||||||||||||||    
17836791 atggacgaaattggcaagtgcaccaaatcataacaagtaagaaagtagtaagttt 17836845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 638 - 738
Target Start/End: Original strand, 4130175 - 4130278
Alignment:
638 gtgttagtatttctctatttcaagagagaaggtaacttgtctatgcttttatttagagag--gttttgtaatt-tctcccacttaataaaagttatctac 734  Q
    |||||||||||   ||||||||||||||| ||||| |||||| | ||| |||||||||||  || |||||||| ||| ||||||| | |||||| |||||    
4130175 gtgttagtattgtcctatttcaagagagagggtaatttgtctctccttgtatttagagagaagtcttgtaattatcttccacttagtgaaagttctctac 4130274  T
735 tctt 738  Q
    ||||    
4130275 tctt 4130278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 790 - 838
Target Start/End: Complemental strand, 23224680 - 23224632
Alignment:
790 gaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||||| ||||||| |||||||||||||||||| || |||||||||||    
23224680 gaaattggcaagtgcgtcaaatcgtaacaagtaataaggtagtaagttt 23224632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 784 - 838
Target Start/End: Original strand, 11768885 - 11768939
Alignment:
784 atggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    |||||| |||||  ||||||||||||||||||| ||| || ||||||||||||||    
11768885 atggataaaatttgcaagtgcatcaaatcgtaataaggaataaagtagtaagttt 11768939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 784 - 834
Target Start/End: Complemental strand, 30676729 - 30676679
Alignment:
784 atggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaa 834  Q
    ||||| ||| ||||||||| || ||||||||||||||||| ||||||||||    
30676729 atggacgaacttgacaagttcaccaaatcgtaacaagtaataaagtagtaa 30676679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 792 - 837
Target Start/End: Original strand, 23420485 - 23420530
Alignment:
792 aattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtt 837  Q
    ||||| |||||| | ||||||||||||||||| |||||||||||||    
23420485 aattggcaagtgtaccaaatcgtaacaagtaataaagtagtaagtt 23420530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 781 - 838
Target Start/End: Complemental strand, 7422 - 7365
Alignment:
781 ctgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    |||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||    
7422 ctgatggacgaaattgacaagtgcaccaaatcgtaacaagtaataaagtagtaagttt 7365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 788 - 848
Target Start/End: Complemental strand, 22626 - 22566
Alignment:
788 atgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtttttggtcttca 848  Q
    ||||||||| ||||||||||| || ||||||||||| |||||||||| ||| | |||||||    
22626 atgaaattggcaagtgcatcatattgtaacaagtaataaagtagtaaatttattgtcttca 22566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 591 - 697
Target Start/End: Complemental strand, 24671293 - 24671187
Alignment:
591 gaaaaatacaggaaggaaatagagtttctcctgtaaggtttcatctggtgttagtatttctctatttcaagagagaaggtaacttgtctatgcttttatt 690  Q
    |||||||| ||  |||||||| |||||||||||| |||||||  || |||||||||||   ||||||||||||||| ||||| |||||| | ||| ||||    
24671293 gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagtgttagtattctcctatttcaagagagagggtaatttgtctctccttgtatt 24671194  T
691 tagagag 697  Q
    |||||||    
24671193 tagagag 24671187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 554
Target Start/End: Complemental strand, 34489693 - 34489587
Alignment:
454 ttttgcatgaaagacaagtgtcttgctg----taaggaactattgtttacctctcctataaat--caagtttatttgcaccatttcaatcatcccataaa 547  Q
    ||||||||| |||||||||| |||| ||    |||||||| |||||||||||||| |||||||  |||||| |||| |||||||||| ||||||||| ||    
34489693 ttttgcatggaagacaagtggcttgttgcatgtaaggaaccattgtttacctctcttataaatagcaagttcatttccaccatttcattcatcccatcaa 34489594  T
548 atagtaa 554  Q
     ||||||    
34489593 gtagtaa 34489587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 613 - 735
Target Start/End: Complemental strand, 31205014 - 31204893
Alignment:
613 agtttctcctgtaaggtttcatctggtgttagtatttctc-tatttc-aagagagaaggtaacttgtctatgcttttatttagagaggttttgtaatttc 710  Q
    |||||||||| ||||||||| |  |||||||||||| ||| |||||| || |||||  | ||||||||| | ||| |||||||||||||||||||||||     
31205014 agtttctcctataaggtttctttcggtgttagtatt-ctcatatttcgaatagaga--gaaacttgtctctccttatatttagagaggttttgtaatttt 31204918  T
711 tcccacttaataaaagttatctact 735  Q
    ||||||||| | |||||| ||||||    
31204917 tcccacttagtgaaagttctctact 31204893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 781 - 848
Target Start/End: Original strand, 25918085 - 25918152
Alignment:
781 ctgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtttttggtcttca 848  Q
    ||||||||  ||||||||||||||| ||||| ||||||||||| || ||||||||||| | |||||||    
25918085 ctgatggaaaaaattgacaagtgcaccaaattgtaacaagtaataacgtagtaagtttatcgtcttca 25918152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 536 - 697
Target Start/End: Original strand, 4579078 - 4579240
Alignment:
536 tcatcccataaaatagtaatacaacaataagaattagagtttatggaaagtgatcg-aaaaatacaggaaggaaatagagtttctcctgtaaggtttcat 634  Q
    ||||| ||| || |||||| ||||||| ||||||||||| || | || |||||  | ||||||| ||  |||||||| |||||||||||| |||||||      
4579078 tcatcacatcaagtagtaacacaacaacaagaattagagcttgttgagagtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctc 4579177  T
635 ctggtgttagtatttctctatttcaagagagaaggtaacttgtctatgcttttatttagagag 697  Q
     | | |||||||||   |||||||| |||||| ||||| |||||| | ||| |||||||||||    
4579178 atagagttagtattctcctatttcacgagagagggtaatttgtctctccttgtatttagagag 4579240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 489 - 574
Target Start/End: Complemental strand, 34470012 - 34469925
Alignment:
489 ctattgtttacctctcctataaat--caagtttatttgcaccatttcaatcatcccataaaatagtaatacaacaataagaattagag 574  Q
    |||| |||||||||||||||||||   ||||| |||||||| |||||| |||||| || || |||||| ||||||| || ||||||||    
34470012 ctatggtttacctctcctataaatagaaagttcatttgcacaatttcattcatccgatcaagtagtaacacaacaacaacaattagag 34469925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 794 - 837
Target Start/End: Complemental strand, 8839717 - 8839674
Alignment:
794 ttgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtt 837  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||    
8839717 ttgacaagtgcatcaaaacgtaataagtaataaagtagtaagtt 8839674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 792 - 837
Target Start/End: Complemental strand, 26420042 - 26419997
Alignment:
792 aattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtt 837  Q
    ||||| |||||| ||||||||||||||||||| ||| |||||||||    
26420042 aattggcaagtgaatcaaatcgtaacaagtaataaaatagtaagtt 26419997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 785 - 834
Target Start/End: Original strand, 33913400 - 33913449
Alignment:
785 tggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaa 834  Q
    |||| ||||||| |||||||| ||||| ||||||||||| ||||||||||    
33913400 tggacgaaattggcaagtgcaccaaattgtaacaagtaataaagtagtaa 33913449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 782 - 834
Target Start/End: Original strand, 13803097 - 13803149
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaa 834  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||| ||||||    
13803097 tgatggacgaaattgacaagtgcatcaaatcgtaacaagtaataaaatagtaa 13803149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 782 - 835
Target Start/End: Complemental strand, 12957620 - 12957567
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaag 835  Q
    ||||||| ||||||||||||||||  |||||||||||||||| |||||||||||    
12957620 tgatggacgaaattgacaagtgcactaaatcgtaacaagtaataaagtagtaag 12957567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 781 - 837
Target Start/End: Complemental strand, 26853673 - 26853617
Alignment:
781 ctgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtt 837  Q
    ||||||||||||||||  || |||| ||||||||||||||||| |||||||||||||    
26853673 ctgatggatgaaattggaaaatgcaccaaatcgtaacaagtaataaagtagtaagtt 26853617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 782 - 838
Target Start/End: Complemental strand, 32240510 - 32240454
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    |||||||  |||||| |||||||| ||||| ||||||||||| ||||||||||||||    
32240510 tgatggacaaaattggcaagtgcaccaaattgtaacaagtaataaagtagtaagttt 32240454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 791 - 846
Target Start/End: Complemental strand, 28075721 - 28075666
Alignment:
791 aaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtttttggtctt 846  Q
    |||||||||||| || ||||| ||||||||||| ||||||||||||| ||| ||||    
28075721 aaattgacaagtacaccaaattgtaacaagtaataaagtagtaagttattgttctt 28075666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 796 - 837
Target Start/End: Complemental strand, 18790109 - 18790068
Alignment:
796 gacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtt 837  Q
    |||||||||| ||||||||| ||||||| |||||||||||||    
18790109 gacaagtgcaccaaatcgtatcaagtaataaagtagtaagtt 18790068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 778 - 838
Target Start/End: Original strand, 41256204 - 41256265
Alignment:
778 ttcctgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagt-agtaagttt 838  Q
    ||||||||||| |||||||||||||||| ||||||||||||| ||| ||||| |||||||||    
41256204 ttcctgatggacgaaattgacaagtgcaccaaatcgtaacaaataataaagtaagtaagttt 41256265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 838
Target Start/End: Complemental strand, 31000668 - 31000612
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||||| ||||||  |||||||||||||| ||||||||||| ||||||||||||||    
31000668 tgatggacgaaatttgcaagtgcatcaaattgtaacaagtaataaagtagtaagttt 31000612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 792 - 837
Target Start/End: Original strand, 17495995 - 17496040
Alignment:
792 aattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtt 837  Q
    |||||||||||||| ||||||| ||||||||| | |||||||||||    
17495995 aattgacaagtgcaccaaatcggaacaagtaatatagtagtaagtt 17496040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 793 - 834
Target Start/End: Original strand, 23854055 - 23854096
Alignment:
793 attgacaagtgcatcaaatcgtaacaagtaacaaagtagtaa 834  Q
    ||||||||||||| |||||| |||||||||| ||||||||||    
23854055 attgacaagtgcaccaaatcataacaagtaataaagtagtaa 23854096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 782 - 823
Target Start/End: Original strand, 27416083 - 27416124
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaa 823  Q
    ||||||| ||||||||||| |||| |||||||||||||||||    
27416083 tgatggacgaaattgacaattgcaccaaatcgtaacaagtaa 27416124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 737
Target Start/End: Complemental strand, 30397170 - 30397034
Alignment:
604 aggaaatagagtttctcctgtaaggtttcatctggtgttagtatttctctatttcaagagagaaggtaacttgtctatgcttttatttag--agaggttt 701  Q
    |||||||| |||||||||||| || ||||  || |||||| ||||   ||||||||| | ||| ||||| |||||| | ||| ||| |||  |||||| |    
30397170 aggaaatatagtttctcctgtgagatttctcctagtgttaatattctcctatttcaacatagagggtaatttgtctctccttgtatatagaaagaggtct 30397071  T
702 tgtaatttctcccacttaat-aaaagttatctactct 737  Q
    |||||||||| ||||||| | ||||||| ||||||||    
30397070 tgtaatttcttccacttagtgaaaagttctctactct 30397034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 838
Target Start/End: Original strand, 11273684 - 11273740
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    |||||||  |||||| |||||||||||||| ||||||||||| ||||||||||||||    
11273684 tgatggacaaaattggcaagtgcatcaaattgtaacaagtaataaagtagtaagttt 11273740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 838
Target Start/End: Original strand, 16617447 - 16617503
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||||| |||| ||||||||||| ||||||||||| ||||| ||||||||||||||    
16617447 tgatggacgaaactgacaagtgcaccaaatcgtaactagtaataaagtagtaagttt 16617503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 782 - 837
Target Start/End: Complemental strand, 24519014 - 24518959
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagtt 837  Q
    ||||||| |||| || |||||| ||||||||||||||||||| |||||||||||||    
24519014 tgatggacgaaactggcaagtgtatcaaatcgtaacaagtaataaagtagtaagtt 24518959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 782 - 838
Target Start/End: Complemental strand, 20715899 - 20715843
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||||| |||||||||||||||| ||||| |||| |||||| || |||||||||||    
20715899 tgatggacgaaattgacaagtgcaccaaattgtaataagtaataaggtagtaagttt 20715843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 782 - 836
Target Start/End: Original strand, 16621469 - 16621523
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagt 836  Q
    ||||||| |||| ||||||||||| ||||||||||| ||||| ||| ||||||||    
16621469 tgatggacgaaactgacaagtgcaccaaatcgtaactagtaataaaatagtaagt 16621523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 784 - 834
Target Start/End: Complemental strand, 10021 - 9971
Alignment:
784 atggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaa 834  Q
    ||||||||||||| ||| |||| ||||||||||||||||| ||||||||||    
10021 atggatgaaattggcaaatgcaccaaatcgtaacaagtaataaagtagtaa 9971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 790 - 838
Target Start/End: Original strand, 7539 - 7587
Alignment:
790 gaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||| |||||||||| |||||| |||||||||| ||||||||||||||    
7539 gaaatcgacaagtgcaccaaatcataacaagtaataaagtagtaagttt 7587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 782 - 833
Target Start/End: Original strand, 10553 - 10604
Alignment:
782 tgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagta 833  Q
    ||||||| |||||||||||||||| |||||| |||||||||| || ||||||    
10553 tgatggacgaaattgacaagtgcaccaaatcataacaagtaataatgtagta 10604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 781 - 836
Target Start/End: Complemental strand, 9964 - 9909
Alignment:
781 ctgatggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagt 836  Q
    |||||||||  ||||  |||||||||||||| ||||||||||| ||||||||||||    
9964 ctgatggatagaattcgcaagtgcatcaaattgtaacaagtaataaagtagtaagt 9909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 784 - 838
Target Start/End: Original strand, 36494 - 36548
Alignment:
784 atggatgaaattgacaagtgcatcaaatcgtaacaagtaacaaagtagtaagttt 838  Q
    ||||| ||||||| |||||||| ||||||  ||||||||| ||||||||||||||    
36494 atggacgaaattggcaagtgcaccaaatcacaacaagtaataaagtagtaagttt 36548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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