View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_high_25 (Length: 342)
Name: NF6020_high_25
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 338
Target Start/End: Original strand, 441470 - 441802
Alignment:
| Q |
5 |
atagatccataaataattaggcttaggtaatgtgggttgagtcgggttgactcactaggtttgtatgccgatccacacccatgaacacaactaaacatga |
104 |
Q |
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| T |
441470 |
atagatccataaataattaggcttaggcaatgtgggttgagtcgggttgactcactaggtttgtatgccgatccacacccatgaacacaactaaacatga |
441569 |
T |
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| Q |
105 |
gttttgtgttacctttataccaaaatctaaattttgaaaaagacttctcaattaaagatgttttagggttcatgtgacccattcaatctgattcgataat |
204 |
Q |
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| T |
441570 |
gttgtgtgttacctttataccaaaatctaaattttgaaaaagacttctcaattaaagatgttttagggtacaggtgacccattcaatctgattcgataat |
441669 |
T |
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| Q |
205 |
ccaaatgaagctaaattttattttatttcaatttattcgagatcgggtccaactgaactcaacttgtttaaatctgaaatgttttcgttttttgggtaat |
304 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
441670 |
ccaaatgaagctaacttctattttatttcaatttattcgagatcgggtccaactgaactcaacttgttcaaatctgaaatgttttcg-tttttgggtaat |
441768 |
T |
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| Q |
305 |
aaattttcaagttcaaatcgtagaatttagtata |
338 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
441769 |
aaatgttcaagttcaaatcgtagaatttagtata |
441802 |
T |
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