View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_high_26 (Length: 341)
Name: NF6020_high_26
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 17492158 - 17491847
Alignment:
| Q |
18 |
ataatcctctaacctagttgaattttttggtgttgaagtttctgattctcttttgttgaaacttgttctcaaaatcatagcaccatctttggaaccaaaa |
117 |
Q |
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| T |
17492158 |
ataatcctctaacctagttgaactttttgttgttgaagtttctgattctcttttgttgaaacttgttctcaaaatcatagcaccatctttggaaccaaaa |
17492059 |
T |
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| Q |
118 |
ctatagtggaattgaagaccaaagagtgaatgcctaacaatttcttcccaagctgatgatagtaaagaaagtgataatcccatagagatgtagattcaca |
217 |
Q |
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| T |
17492058 |
ctatagtggaattgaagaccaaagagtgaatgcctaacaatttcttcccaagctgatgatagtaaagaaagtgataatcccatagagatgtagattcaca |
17491959 |
T |
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| Q |
218 |
ccaatttcaatttgtttgatgaaaattcaatactatactttcttgaatcctgttgaaattacatataaatcatcattaatcaaaccatacataagtcgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17491958 |
ccaatttcaatttgtttgatgaaaattcaatactatactttcttgaatcctgttcaaattacatataaaccatcattaatcaaaccatacataagtcgaa |
17491859 |
T |
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| Q |
318 |
ttttctgagtat |
329 |
Q |
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|||| ||||||| |
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| T |
17491858 |
ttttttgagtat |
17491847 |
T |
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