View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_high_27 (Length: 333)
Name: NF6020_high_27
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 46905650 - 46905957
Alignment:
| Q |
11 |
aatgagtaaatcgacaaattagtccttgaaactgtaagcattagtccgaatagtccatgatttttgtggattagaaaatacatcagtaaaattgtggtga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46905650 |
aatgagtaaatcgacaaattagtccttgaaactgtaagcattagtccgaatagtccatgatttttgtggattagaatatacatcagtaaaattgtggtga |
46905749 |
T |
|
| Q |
111 |
agtgttggcaaaatagtatttctgtta-cttttaccactagacactttgatgtgatatgctaactaaatatgctattcctccgtgtcgatctcactttgc |
209 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46905750 |
agtgttggcaaaatagtatttctgttaacttttaccactagacactttgatgtgatatgctaactaaatatgctattcctccgtgtcgatctcactttgc |
46905849 |
T |
|
| Q |
210 |
ctataagatatagatctcatagactaatttgtcatcaattaattcctacacagttgcaattatttgttcctaagatggcctgaatttcacaggcaaatta |
309 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46905850 |
ctataagatatagatctcgtagactaatttgtcatcaattaattcctacacagttgcaattatttgttcctaagatggcctgaatttcacaggcaaatta |
46905949 |
T |
|
| Q |
310 |
gtccatac |
317 |
Q |
| |
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|||||||| |
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| T |
46905950 |
gtccatac |
46905957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 31586524 - 31586484
Alignment:
| Q |
11 |
aatgagtaaatcgacaaattagtccttgaaactgtaagcat |
51 |
Q |
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||||||||||| ||||||||||||||||||| | ||||||| |
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| T |
31586524 |
aatgagtaaatagacaaattagtccttgaaattttaagcat |
31586484 |
T |
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