View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6020_high_30 (Length: 309)

Name: NF6020_high_30
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6020_high_30
NF6020_high_30
[»] chr4 (1 HSPs)
chr4 (1-296)||(49810583-49810878)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 49810583 - 49810878
Alignment:
Q  1 gtcacagtggttttggcaaatcacaacaaatctaaacatgagttttactattttatgtatgtttgggatctaaatttacatttgctccaaatacaacaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49810583 gtcacagtggttttggcaaatcacaacaaatctaaacatgagttttactattttatgtatgtttgggatctaaatttacatttgctccaaatacaacaac 49810682  T
Q  101 acaattattcacgagaatacacatatactgtaaaagacagaggcatttcgattcccacactgtagaacctttgtatttttgtcttaggtacgaagactgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49810683 acaattattcacgagaatacacatatactgtaaaagacagaggcatttcgattcccacactgtagaacctttgtatttttgtcttaggtacgaagactgt 49810782  T
Q  201 atggtctatgcaacgtgtgcagtgatgcatgagatccaattgggagagtgcagattcttcatccaataagaaaagagagggtaccagagagaaaat 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  49810783 atggtctatgcaacgtgtgcagtgatgcatgagatccaattgggagagtgcagattcttcatccaataagaaaagagagggcagcagagagaaaat 49810878  T

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