View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6020_high_37 (Length: 272)
Name: NF6020_high_37
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_high_37 |
 | |
|
| [»] scaffold0209 (4 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 177894 - 177655
Alignment:
| Q |
13 |
aatatcatgtcaacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttccaggaaagctttgtagt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
177894 |
aatatcatgtcaacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttctaggaaagctttgtagt |
177795 |
T |
|
| Q |
113 |
taattaaatcannnnnnncttctatgcgattccnnnnnnnntgaaaatatctttgtttatgctcttgcatttcctcaagttttttgttgttatggtggat |
212 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
177794 |
taattaaatcatttttttcttctatgcgattccaaaaaaaatgaaaatatctttgtttatgctcttgcatttcctcaagttttttgttgttatggtggat |
177695 |
T |
|
| Q |
213 |
aggtccaattgatatgagcagaggtgtatatgcctcttct |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
177694 |
aggtccaattgatatgagcagaggtgtatatgcctcttct |
177655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 606582 - 606355
Alignment:
| Q |
15 |
tatcatgtcaacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttccaggaaagctttgtagtta |
114 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||||| ||| | || |||||||| ||||||||||| | ||||||||||| ||||||| ||||||||| |
|
|
| T |
606582 |
tatcatatcaacaaattgtttctggctaatatcaacaaaaattttctggtaacagtggcgaatattatgttcttcttgttcaaggaaagttttgtagttc |
606483 |
T |
|
| Q |
115 |
attaaatcannnnnnncttctatgcgattccnnnnnnnntgaaaatatctttgtttatgctcttgcatttcctcaagttttttgttgttatggtggatag |
214 |
Q |
| |
|
||||||||| |||| |||||||| ||||||||||| ||||| || |||||||| |||||| || |||||||| |||||||||||| |
|
|
| T |
606482 |
attaaatcacttttttggtctaggcgattccaaaagaaatgaaaatatctctgtttgtgttcttgcatatcctcatgtgttttgttgctatggtggatag |
606383 |
T |
|
| Q |
215 |
gtccaattgatatgagcagaggtgtata |
242 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
606382 |
gtccaattgatatgagtagaggtgtata |
606355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 115895 - 116128
Alignment:
| Q |
15 |
tatcatgtcaacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttccaggaaagctttgtagtta |
114 |
Q |
| |
|
|||||||||||| ||||| ||| | ||||||| | || |||||||||||||| |||| || |||| ||||||||||| |||||| |||||||||| |
|
|
| T |
115895 |
tatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaaggaaaactttgtagttc |
115994 |
T |
|
| Q |
115 |
attaaatcannnnnnncttctatgcgattccnnnnnnnntgaaaatatctttgtttatgctcttgcatttcctcaagttttttgttgttatggtggatag |
214 |
Q |
| |
|
|| |||||| |||| |||||||| || |||||||| ||||| | ||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
115995 |
atgaaatcacttttcttgtctaggcgattccaaaaataatggaaatatctatgtttgtactcttgcatttcctcaagtctttcgttgttatggtggatag |
116094 |
T |
|
| Q |
215 |
gtccaattgatatgagcagaggtgtatatgcctc |
248 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
116095 |
gtccaatagatatgattagaggtgtataagcctc |
116128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 10426 - 10520
Alignment:
| Q |
154 |
tgaaaatatctttgtttatgctcttgcatttcctcaagttttttgt---tgttatggtggataggtccaattgatatgagcagaggtgtatatgc |
245 |
Q |
| |
|
|||||||| || ||||| | ||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
10426 |
tgaaaatacctatgtttgtattcttgcatttcctcaagttttttgttgttgttatggtggataggaccaatggatatcagcagaggtgtatatgc |
10520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 23880 - 23974
Alignment:
| Q |
154 |
tgaaaatatctttgtttatgctcttgcatttcctcaagttttttgt---tgttatggtggataggtccaattgatatgagcagaggtgtatatgc |
245 |
Q |
| |
|
|||||||| || ||||| | ||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
23880 |
tgaaaatacctatgtttgtattcttgcatttcctcaagttttttgttgttgttatggtggataggaccaatggatatcagcagaggtgtatatgc |
23974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 10287 - 10395
Alignment:
| Q |
15 |
tatcatgtcaacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttccaggaaagctttgtagtta |
114 |
Q |
| |
|
|||||| ||||| | |||||||| |||||||||| ||||||||||||||||| |||| ||||| | |||||||||| || || |||||||||| |
|
|
| T |
10287 |
tatcatatcaaccatttgttcattgctgatatcatagaacttcttttggtaacatcggcgtatattctgatcttcttgttgaagaaattctttgtagttc |
10386 |
T |
|
| Q |
115 |
attaaatca |
123 |
Q |
| |
|
|| |||||| |
|
|
| T |
10387 |
atcaaatca |
10395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 23741 - 23849
Alignment:
| Q |
15 |
tatcatgtcaacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttccaggaaagctttgtagtta |
114 |
Q |
| |
|
|||||| ||||| | |||||||| |||||||||| ||||||||||||||||| |||| ||||| | |||||||||| || || |||||||||| |
|
|
| T |
23741 |
tatcatatcaaccatttgttcattgctgatatcatagaacttcttttggtaacatcggcgtatattctgatcttcttgttgaagaaattctttgtagttc |
23840 |
T |
|
| Q |
115 |
attaaatca |
123 |
Q |
| |
|
|| |||||| |
|
|
| T |
23841 |
atcaaatca |
23849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 37438676 - 37438753
Alignment:
| Q |
175 |
tcttgcatttcctcaagttttttgttgttatggtggataggtccaattgatatgagcagaggtgtatatgcctcttct |
252 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| | | ||||||||| || ||| ||||||| |||||||| |
|
|
| T |
37438676 |
tcttgtatttcctcaagttttttgttgttatggtggattgatacaattgatacaagtagaagtgtataatcctcttct |
37438753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 37438567 - 37438635
Alignment:
| Q |
55 |
ttcttttggtaacaatggcgaatatttttctcttcttgttccaggaaagctttgtagttaattaaatca |
123 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||| | ||| | |||| |||| ||||||||| |
|
|
| T |
37438567 |
ttcttttggtaacatcggcgtatattttgctcttcttgttcaacgaaggttttgcagttcattaaatca |
37438635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University