View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_high_38 (Length: 268)
Name: NF6020_high_38
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 46905648 - 46905394
Alignment:
| Q |
1 |
cataaaaaactaatatttaacaccaagataagtagataactnnnnnnncactacttcaaagtttgatttatcatgttagcaagataactaacttacatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46905648 |
cataaaaaactaatatttaacaccaagataagtagataactaaaaaaacactacttcaaagtttgatttatcatgttagcaagataactaacttacatta |
46905549 |
T |
|
| Q |
101 |
ccagcaatagccaagttttccattgctttcaaatcctcccaatcagtggccaccatgagagtccggagctccacaaaactcaactccatctccttgtcag |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46905548 |
ccagcaatagtcaagttttccattgctttcaaatcctcccaatcagtggccaccatgagagtccggagctctacaaaactcaactccatctccttgtcag |
46905449 |
T |
|
| Q |
201 |
tacccaattcaggtaccttatcagaaacatcgatagcccagtaaacgttatcttc |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46905448 |
tacccaattcaggtaccttatcagaaacatcgatagcccagtaaacgttatcttc |
46905394 |
T |
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