View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_high_39 (Length: 261)
Name: NF6020_high_39
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_high_39 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 27827197 - 27827002
Alignment:
| Q |
1 |
agtaatgaatcaaaataaaggaacctgcttgtgctaagataatcctaaattctaaaaagcatatcttcaatttctaaacaatattctaaaacttagaaca |
100 |
Q |
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| T |
27827197 |
agtaatgaatcaaaataaagaaacctacttgtgctaagataatcctaaattctaaaaagcatatcttcaatttctaaacaatattctaaaacttagaaca |
27827098 |
T |
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| Q |
101 |
aactcaaccaatgaattggatcaataattgaaccaactgaataaatgttaatcgcgcatgaatcgaatacttgcgagcgctgcagtataggggaag |
196 |
Q |
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| T |
27827097 |
aactcaaccaatgaattggatcaataattaaaccaactgaataaatgttaatcgcgcatgaatcgaatacttgcgagcgctgcagtataggggaag |
27827002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 27831777 - 27831582
Alignment:
| Q |
1 |
agtaatgaatcaaaataaaggaacctgcttgtgctaagataatcctaaattctaaaaagcatatcttcaatttctaaacaatattctaaaacttagaaca |
100 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
27831777 |
agtaatgaatcaaaataaaggaacctacttgtgccaagataatcctaaattctaaaaagcacattttcaatttctaaacaatattctaaaacttagaaca |
27831678 |
T |
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| Q |
101 |
aactcaaccaatgaattggatcaataattgaaccaactgaataaatgttaatcgcgcatgaatcgaatacttgcgagcgctgcagtataggggaag |
196 |
Q |
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| T |
27831677 |
aactcaaccaatgaattggatcaataattgaaccaactgaataaatgttaatcgcgcatgaatcgaatacttgcgagcgctgcagtataggggaag |
27831582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 27827955 - 27827888
Alignment:
| Q |
9 |
atcaaaataaaggaacctgcttgtgctaagataatcctaaattctaaaaagcatatcttcaatttcta |
76 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||| |
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| T |
27827955 |
atcaaaataaaggaacctgtttgtgctaagataatcataaattctaaaatgcatagtttcaatttcta |
27827888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 27832541 - 27832474
Alignment:
| Q |
9 |
atcaaaataaaggaacctgcttgtgctaagataatcctaaattctaaaaagcatatcttcaatttcta |
76 |
Q |
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||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| ||||||||||| |
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| T |
27832541 |
atcaaaataaaggaacctgtttgtgctaaaataatcataaattctaaaaagcatagtttcaatttcta |
27832474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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