View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_high_40 (Length: 258)
Name: NF6020_high_40
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_high_40 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 24493296 - 24493519
Alignment:
| Q |
19 |
aaaacccccaaacctcacctccattactgcccacttcccaacatccgtggctcccactccctaatatcttggcccacccacatcagcctagaacctcaga |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24493296 |
aaaacccccaaacctcacctccattactgctcacttcccaacatccgtggctcccactccctaatatcttttcccacccacatcagcctagaacctcaga |
24493395 |
T |
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| Q |
119 |
aaccataatccataattcaaccacacctccatcaatccaacccactccttcaaacacaaatagcattcaaccatcaccttcacccacgcttacatcctca |
218 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493396 |
aaccataatccataattcaaccacacctccatcaacccaacccactccttcaaacacaaatagcattcaaccatcaccttcacccacgcttacatcctca |
24493495 |
T |
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| Q |
219 |
tcacaaaccacaccaccattggag |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
24493496 |
tcacaaaccacaccaccattggag |
24493519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 92661 - 92884
Alignment:
| Q |
19 |
aaaacccccaaacctcacctccattactgcccacttcccaacatccgtggctcccactccctaatatcttggcccacccacatcagcctagaacctcaga |
118 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
92661 |
aaaacccccaaacctcacctccattactgcccactccccaacatccgtggctcccactccctaatatcttaacccacccacatcagcctagaacctcaga |
92760 |
T |
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| Q |
119 |
aaccataatccataattcaaccacacctccatcaatccaacccactccttcaaacacaaatagcattcaaccatcaccttcacccacgcttacatcctca |
218 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
92761 |
aaccataatccataattcaaccacacctccatcaaccaaacccactccttcaaacacaaatagcattcaaccatcaccttcactcacgcttacatcctca |
92860 |
T |
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| Q |
219 |
tcacaaaccacaccaccattggag |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
92861 |
tcacaaaccacaccaccattggag |
92884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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