View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6020_high_42 (Length: 251)

Name: NF6020_high_42
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6020_high_42
NF6020_high_42
[»] chr4 (3 HSPs)
chr4 (160-226)||(55857866-55857932)
chr4 (38-85)||(55857989-55858036)
chr4 (108-141)||(55857887-55857920)
[»] chr2 (3 HSPs)
chr2 (163-226)||(29276664-29276727)
chr2 (38-85)||(29276557-29276604)
chr2 (108-141)||(29276673-29276706)
[»] scaffold0175 (2 HSPs)
scaffold0175 (8-85)||(27647-27724)
scaffold0175 (180-226)||(27528-27574)


Alignment Details
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 55857932 - 55857866
Alignment:
Q  160 ggctgtcataactttaagtctaagctaagatcataattacctaaatgtctcatatacttaccgctaa 226  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||    
T  55857932 ggctgtcattactttaagtttaagctaagatcataattacctaaatgtctcaaatacttactgctaa 55857866  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 55858036 - 55857989
Alignment:
Q  38 ttatcaaaatccatggaatatttgatttcaaacaatgaacacatttca 85  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  55858036 ttatcaaaatccatggaatatttgatttcaaacaatgtacacatttca 55857989  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 55857920 - 55857887
Alignment:
Q  108 tttaagtttaagctaagatcataattatctaaat 141  Q
    ||||||||||||||||||||||||||| ||||||    
T  55857920 tttaagtttaagctaagatcataattacctaaat 55857887  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 29276664 - 29276727
Alignment:
Q  163 tgtcataactttaagtctaagctaagatcataattacctaaatgtctcatatacttaccgctaa 226  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||    
T  29276664 tgtcattactttaagtttaagctaagatcataattacctaaatgtctcaaatacttactgctaa 29276727  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 29276557 - 29276604
Alignment:
Q  38 ttatcaaaatccatggaatatttgatttcaaacaatgaacacatttca 85  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29276557 ttatcaaaatccatggaatatttgatttcaaacaatgtacacatttca 29276604  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 29276673 - 29276706
Alignment:
Q  108 tttaagtttaagctaagatcataattatctaaat 141  Q
    ||||||||||||||||||||||||||| ||||||    
T  29276673 tttaagtttaagctaagatcataattacctaaat 29276706  T

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Target: scaffold0175 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 27724 - 27647
Alignment:
Q  8 aaatatactaattcttggcattttctgtcattatcaaaatccatggaatatttgatttcaaacaatgaacacatttca 85  Q
    ||||||||||||||||| |||||  |||  ||||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  27724 aaatatactaattcttgacatttattgttgttatcaaaatccatgaaatattttatttcaaacaatgtacacatttca 27647  T

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Target: scaffold0175; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 27574 - 27528
Alignment:
Q  180 taagctaagatcataattacctaaatgtctcatatacttaccgctaa 226  Q
    |||| ||||||||||| ||||||||||||||| |||||||| |||||    
T  27574 taaggtaagatcataactacctaaatgtctcaaatacttactgctaa 27528  T

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