View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_high_45 (Length: 243)
Name: NF6020_high_45
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 24 - 231
Target Start/End: Complemental strand, 44493631 - 44493422
Alignment:
| Q |
24 |
agtatatatg-ttagaattgaca-ttaacttgtcttcctagctttcaaatctaccattgtggtgctttaaagtctaagaaacacgtgacttaattgttta |
121 |
Q |
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| T |
44493631 |
agtatatatggttagaattgacacttaacttgtcttcctagctttcaaatctaccattgtggtgctttaaagtctaagaaacacgtgacttaattgttta |
44493532 |
T |
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| Q |
122 |
ctacnnnnnnnggtaaaaaatctagtggccgaagcttatgcattttaaatatgaaaaagtgggatgtctaagatttgaactccgactattacatatatca |
221 |
Q |
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| T |
44493531 |
ctactttttttagtaaaaaatttagtggccaaaacttacgcattttaaatatggaaaagtggggtgtctgaggtttgaactccgaccactacatatatca |
44493432 |
T |
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| Q |
222 |
tgcattgttc |
231 |
Q |
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| T |
44493431 |
tgcattgttc |
44493422 |
T |
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Back To:
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 30626525 - 30626566
Alignment:
| Q |
162 |
cattttaaatatgaaaaagtgggatgtctaagatttgaactc |
203 |
Q |
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| T |
30626525 |
cattttaaatatgaacaagtgggatgtctgagattcgaactc |
30626566 |
T |
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