View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_high_46 (Length: 238)
Name: NF6020_high_46
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 15642591 - 15642808
Alignment:
| Q |
1 |
ttgcgcggagaggatacccgatttacatccaaaaaagataaaaagtagaagagcgatagagataaatatatacgatgttacatgcatatatgtattttaa |
100 |
Q |
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| T |
15642591 |
ttgcgcgcggaggatacccgatttacatccaaaaaagataaaaagtagaagagcgatagagataaatatataagatgttacatgcatatatgtattttaa |
15642690 |
T |
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| Q |
101 |
tgttcaaataataggacaaaaataaatatatgaagttaaataaataatgacctgtaagttttgagaaggccaaggcctttatagagttcaacaaaagcac |
200 |
Q |
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| T |
15642691 |
tgttcaaataatacgacaaaaataaatatatgaagttaaataaataatgacctgtaagttttgagaaggccaaggcctttatagagttcaacaaaagcac |
15642790 |
T |
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| Q |
201 |
ttctaatcatcttttcag |
218 |
Q |
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|||||||||||||||||| |
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| T |
15642791 |
ttctaatcatcttttcag |
15642808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 33515370 - 33515302
Alignment:
| Q |
150 |
acctgtaagttttgagaaggccaaggcctttatagagttcaacaaaagcacttctaatcatcttttcag |
218 |
Q |
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|||| ||||||||||| | |||||||||| ||||||| || |||||||||||||||||||| ||||||| |
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| T |
33515370 |
acctataagttttgagcaagccaaggcctctatagagctccacaaaagcacttctaatcattttttcag |
33515302 |
T |
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