View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_high_8 (Length: 538)
Name: NF6020_high_8
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Original strand, 39300488 - 39300997
Alignment:
| Q |
19 |
gtgtgcatggaaatgttgtgtgatttaaaaggagaaaggtattggcggtttgaagagggttgtggtggatatgttttgcatggagtatgacatgtggaat |
118 |
Q |
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| T |
39300488 |
gtgtgcatggaaatgttgtgtgatttaaaaggagaaaggtattggcggtttgaagaggtttgtggtggatatgttttgcatggagtatgacatgtggaat |
39300587 |
T |
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| Q |
119 |
aagaaacagtgattaatgacacgtgtgaatgttgtgaaattggatattgtgactcagcttataataatgaaaattaaaatatagatggattaggatgatt |
218 |
Q |
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| T |
39300588 |
aagaaacagtgattaataacacgtgtgaatggtgtgaaattggatattgtgactcagcttataataatgaaaattaaaatatagatggattaggatgatt |
39300687 |
T |
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| Q |
219 |
ggatgagacgaggctggtttttcgtgtttaaagacacgtggaagattgaaggagtgcctcgtatgagtttgtgcttggtagaaagaggtacactgcagat |
318 |
Q |
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| T |
39300688 |
ggatgaaacgaggctggtttttcgtgtttaaagacacgtggaagattgaaggattgcctcgtatgagtttgtgcttggtagaaagaggtacactgcagat |
39300787 |
T |
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| Q |
319 |
caatggaagacacctggtctcaataaatgatttaacagtttattggtgattcaagaatattcaattcgatcttccttttgttgtgggttatttttgaaca |
418 |
Q |
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| T |
39300788 |
caatggaagacacctggtctcaataaatgatttaacagtttattggtgattcaagaatattcaattcgatcttcgttttgttgtggcttatttttgaaca |
39300887 |
T |
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| Q |
419 |
attatatttagactgtcattcattcaaatctcaagtttgaatctttagagtgtcaatgannnnnnnnattttgtgtggactaatccatacataattttgt |
518 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
39300888 |
attatatttagagtgtgattcattcaaatctcaagtttgaatctttagagtgtccctgattttttttattttgtgtggactaatccatacataattttgt |
39300987 |
T |
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| Q |
519 |
tttgcctttg |
528 |
Q |
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| T |
39300988 |
tttgcctttg |
39300997 |
T |
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