View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6020_low_1 (Length: 1437)
Name: NF6020_low_1
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 625; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 759 - 1426
Target Start/End: Original strand, 5638469 - 5639137
Alignment:
| Q |
759 |
aaataaattttaaattgtacttctgtttatgattagtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggcc |
858 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638469 |
aaataaattttaaattgtacttctgtttatgattagtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggcc |
5638568 |
T |
|
| Q |
859 |
acagaaggaggattctgcacgggaagtgcaagagttatagatcaccaagtatggtagtgtcatatgtgatactgttcataaccttcttggatttccatgt |
958 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638569 |
acagaaggaggattctgcacgggaagtgcaagagttatagatcaccaagtatggtagtgtcatatgtgatactgttcataaccttcttggatttccatgt |
5638668 |
T |
|
| Q |
959 |
atactgaaacactaaaagagaagaaagattgtaaatgtggaaattaagaatttacttcctccaaactcaaatttaagtnnnnnnnntagtcatggtttgt |
1058 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5638669 |
atactgaaacactaaaagagaagaaagattgtaaatgtggaaattaagaatttacttcctccaaactcaaatttaagtaaaaaaaatagtcatggtttgt |
5638768 |
T |
|
| Q |
1059 |
ggtccataatatataagaaaattctaattaattttactggattactgttatatttcaattagtgttaaacaccactcaattaatgctctcatgaaacaag |
1158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638769 |
ggtccataatatataagaaaattctaattaattttactggattactgttatatttcaattagtgttaaacaccactcaattaatgctctcatgaaacaag |
5638868 |
T |
|
| Q |
1159 |
tttcaaaggaaatttagtga-gagaatgatagttcggagaatgcaattttcttattgcaccaagaaaaataagcaagcttaactaatattcttacttagt |
1257 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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|
| T |
5638869 |
tttcaaaggaaatttagtgaagagaatgatagttcggagaatgcaattttcttattgcaccaagaaaaataagcaaggttaactaatattcttaattagt |
5638968 |
T |
|
| Q |
1258 |
acgtatttagttaattttacttaaatttgagttcagagggagtgtttttcacggaacttctttcattttttcccccacgtttccttcattaatacctgaa |
1357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5638969 |
acgtatttagttaattttacttaaatttgagttcggagggagtgtttttcacggaacttctttcattttttcccccacgtttccttcattaatacctgaa |
5639068 |
T |
|
| Q |
1358 |
tttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatg |
1426 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5639069 |
tttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatg |
5639137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 19 - 704
Target Start/End: Original strand, 5621521 - 5622206
Alignment:
| Q |
19 |
attacttccaaatataagaggaccaagaatttgaggcgttatattgtcattgaagctctctaccaggtagatctcgtcgttcatgcatgctgttttattt |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
5621521 |
attacttccatatataagaggaccaagaatttgaggcgttatattgtcattgaagctctctaccaggtagatctcatcgttcatgcatgctgttatattt |
5621620 |
T |
|
| Q |
119 |
actttacacatctgtaccgtgcttccaatggagcgcgtacaacatttaggtttaaaatcaaagagctataccaattgcttgcttcttgcaacttgtggta |
218 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5621621 |
actttacacatctgtactgtgcttctgatggagcgtgtacaacatttaggtataaaatcaaagagctataccaattgcttgcttcttgcaacttgtggta |
5621720 |
T |
|
| Q |
219 |
tcggtaaattgtactatatgaactactatttctgcagagatattacagtaattagaaaatgaaatttgaatatgtatttatgaaggattgtagtaaacac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5621721 |
tcggtaaattgtactatatgaactactatttctgctgagatattacagtaattagcaaatgaaatttgaatatgtatttatgaaggattgtagtaaacac |
5621820 |
T |
|
| Q |
319 |
tttgagtctgttggtgttgctgttatattggtgtctattgcgatgttgttccttaaaaaagtattactaatctgctacttgccctggttttctcaaccat |
418 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
5621821 |
tttgagtctgttggcgttgctgttatattggtgtctattgcgatgttgttccttaaaagagtattgctaatctgctacttgccctggttttctcaaccat |
5621920 |
T |
|
| Q |
419 |
taagttgtaatagttattttttctgtagttgtcatactaacgacatctattatgctcataatatgccttacctgctgcatgcaaactaaaattgcttgat |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5621921 |
taagttgtaatagttattttttctgtagttgtcatactaacaacatctattatgctcataatatgccttacctgctgcatgcaaactaaaattgcttgat |
5622020 |
T |
|
| Q |
519 |
cagtaactattgacaattgtttcctcgacattttttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttc |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
5622021 |
cagtaactattgacaattgtttcctcgacattttttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatattgttttc |
5622120 |
T |
|
| Q |
619 |
gtattttactggatgagagcaactcatttggtgtgcttggaagttctggaagagatctcactgaacactatggagttccagtatgt |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5622121 |
gtattttactggatgagagcaactcatttggtgtgcttggaagttctggaagaggtctcactgaacactatggagttccagtatgt |
5622206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 1340 - 1406
Target Start/End: Original strand, 22965261 - 22965327
Alignment:
| Q |
1340 |
ccttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataac |
1406 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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|
| T |
22965261 |
ccttcattaatacctgaatttgcaggtccgaactataaaatttgcatgattaagtgatgtgcataac |
22965327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 697 - 738
Target Start/End: Original strand, 5638407 - 5638448
Alignment:
| Q |
697 |
cagtatgtactaaaaagttctatttgggcgtgggtgtgtata |
738 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
5638407 |
cagtatgtactgaaaagttctatttgggcgtgggtgtgtata |
5638448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 3e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 3e-67
Query Start/End: Original strand, 552 - 706
Target Start/End: Complemental strand, 30634741 - 30634587
Alignment:
| Q |
552 |
tttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtg |
651 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
30634741 |
tttcagaattctggtcaaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagcaactcatttggtg |
30634642 |
T |
|
| Q |
652 |
tgcttggaagttctggaagagatctcactgaacactatggagttccagtatgtac |
706 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
30634641 |
tgcttggaagttctggaagaggtctcactgaacactacggagttccagtatgtac |
30634587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 6e-56
Query Start/End: Original strand, 794 - 967
Target Start/End: Complemental strand, 30634501 - 30634326
Alignment:
| Q |
794 |
gtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagt |
893 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
30634501 |
gtggtcgtgtgctgcaggttgagaagttagatcttataactgctgctatgggacatgcattggccacagaaggaggattctgcaccggaagtgcaagagt |
30634402 |
T |
|
| Q |
894 |
tatagatcaccaagtatggtagtgtcatatgtgatactg-ttcat-aaccttcttggatttccatgtatactgaaa |
967 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||||| ||||| |||| ||| |||||||| || |||||||| |
|
|
| T |
30634401 |
tatagatcaccaggtatggtagtgtcatttgtaatactgattcataaaccaacttagatttccaagtgtactgaaa |
30634326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 30635268 - 30635218
Alignment:
| Q |
40 |
accaagaatttgaggcgttatattgtcattgaagctctctaccaggtagat |
90 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
30635268 |
accaagaatttgaggcgttatattgttgtcgaagctctctaccaggtagat |
30635218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 3e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 3e-67
Query Start/End: Original strand, 552 - 706
Target Start/End: Complemental strand, 21423527 - 21423373
Alignment:
| Q |
552 |
tttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtg |
651 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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|
| T |
21423527 |
tttcagaattctggtcaaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagcaactcatttggcg |
21423428 |
T |
|
| Q |
652 |
tgcttggaagttctggaagagatctcactgaacactatggagttccagtatgtac |
706 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21423427 |
tgcttggaagttctggaagaggtctcactgaacactatggagttccagtatgtac |
21423373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 800 - 921
Target Start/End: Complemental strand, 21423281 - 21423160
Alignment:
| Q |
800 |
gtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagttataga |
899 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21423281 |
gtgtgctgcaggttgagaagttagatcttataactgctgctatgggacatgcattggccacagaaggaggattctgcaccggaagtgcaagagttataga |
21423182 |
T |
|
| Q |
900 |
tcaccaagtatggtagtgtcat |
921 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
21423181 |
tcaccaggtatggtagtgtcat |
21423160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 21424069 - 21424019
Alignment:
| Q |
40 |
accaagaatttgaggcgttatattgtcattgaagctctctaccaggtagat |
90 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
21424069 |
accaagaatttgaggcgttatattgttgtcgaagctctctaccaggtagat |
21424019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1342 - 1406
Target Start/End: Complemental strand, 38954654 - 38954590
Alignment:
| Q |
1342 |
ttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataac |
1406 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38954654 |
ttcattaatacctgaatttgcaggtccaaactataaaatttgcatgattaagcgatgtgcataac |
38954590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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