View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_low_10 (Length: 496)
Name: NF6020_low_10
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_10 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 143 - 484
Target Start/End: Complemental strand, 22684888 - 22684547
Alignment:
| Q |
143 |
gaaaacaaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttatgtgttttgttttat |
242 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22684888 |
gaaatcaaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttctgtgttttgttttat |
22684789 |
T |
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| Q |
243 |
ttatgggttgtgactcctttggcaaaaattgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgtt |
342 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684788 |
ttataggttgtgactcctttggcaaaatttgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgtt |
22684689 |
T |
|
| Q |
343 |
atgctatgtctctttttatcagaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattatta |
442 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684688 |
atgctatgtctctttttattaaaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattatta |
22684589 |
T |
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| Q |
443 |
ctacctttgtgcgttgctctattgcacttacacttctgatga |
484 |
Q |
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| T |
22684588 |
ctacctttgtgcgttgctctgttgcacttacacttctgatga |
22684547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 180 - 460
Target Start/End: Complemental strand, 22696146 - 22695870
Alignment:
| Q |
180 |
ctttaaattcatgttttatcacatagatgacacattttaacaaatttatgtgttttgttttatttatgggttgtgactcctttggcaaaaattgccttaa |
279 |
Q |
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| T |
22696146 |
ctttaaattcatgttttatcacatagatgacaaattttaacaaatttctgtgttttattttacatataggttgtgactcctctggcaaaatatgccttaa |
22696047 |
T |
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| Q |
280 |
tattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgttatgctatgtctctttttatcagaacaactttagtgtt |
379 |
Q |
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| T |
22696046 |
cattattgcctattgcatcaagcatagaggaactt---gtcccttctcctaggctaagatgttatcctatgtctattctcatcagaacagctttagtggt |
22695950 |
T |
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| Q |
380 |
ttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattattactacctttgtgcgttgct |
460 |
Q |
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| T |
22695949 |
ttcaagtttagttgtggccctctcttttccatattttggtaagttttgt-cataccattattactacctttgtgcattgct |
22695870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 24493308 - 24493177
Alignment:
| Q |
18 |
gtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatgtaag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24493308 |
gtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatataag |
24493209 |
T |
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| Q |
118 |
agtgatattgtgtagaataaccaaggaaaaca |
149 |
Q |
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| T |
24493208 |
agtgatattgtgtagaataaccaaggaaaaca |
24493177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 92673 - 92542
Alignment:
| Q |
18 |
gtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatgtaag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
92673 |
gtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcgatctagacaaatgtaag |
92574 |
T |
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| Q |
118 |
agtgatattgtgtagaataaccaaggaaaaca |
149 |
Q |
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||||||||||||||||||||||||| |||||| |
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| T |
92573 |
agtgatattgtgtagaataaccaagtaaaaca |
92542 |
T |
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