View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_low_12 (Length: 491)
Name: NF6020_low_12
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 17 - 483
Target Start/End: Complemental strand, 36464855 - 36464389
Alignment:
| Q |
17 |
cttttgtggaccctcacgttgaacccaccatccatataagccgtaagaaagggaacaaaaaccggttggtcaatcgatacgggcctaatttcaaattggt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36464855 |
cttttgtggaccctcacgttgaacccaccatccatataagccgtaagaaagggaacaaaaaccggttggtcaatcgatacgggcctaatttcaaattggt |
36464756 |
T |
|
| Q |
117 |
tcaaaattgaagccacaacgtattccatttgaataaaagccatgtctttcccaagacaaactcttggaccggcctgaaaaaccgaaaacttgtaagggct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36464755 |
tcaaaattgaagccacaacgtattccatttgaataaaagccatgtctttcccaagacaaactcttggaccggcctgaaaaaccgaaaacttgtaagggct |
36464656 |
T |
|
| Q |
217 |
cacatatttcaaaaccccctcgttattattacctccttcttcgatcggttcttcaaaccaccgctctggtttaaactcattccaatctttaccccataag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36464655 |
cacatatttcaaaaccccctcgttattattacctccttcttcgatcggttcttcaaaccaccgctctggtttaaactcattccaatctttaccccataag |
36464556 |
T |
|
| Q |
317 |
gcctccatcctccccatcccataaggaaaataagtcaccctatcacctttcccaaccctagttccatccggcaacacatcattgttggcagcatgcttcg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36464555 |
gcctccatcctccccatcccataaggaaaataagtcaccctatcacctttcccaaccctagttccatccggcaacacatcattgttggcagcatgcttcg |
36464456 |
T |
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| Q |
417 |
aatcccacgccaccggtggatacaacctcatcgattcgcacaaacaagctttcaaatacttcatctc |
483 |
Q |
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| T |
36464455 |
aatcccacgccaccggtggatacaacctcatcgattcgcacaaacaagctttcaaatacttcatctc |
36464389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 201 - 338
Target Start/End: Complemental strand, 36474832 - 36474694
Alignment:
| Q |
201 |
aaaacttgtaagggctcacatatttcaaaaccccc-tcgttattattacctccttcttcgatcggttcttcaaaccaccgctctggtttaaactcattcc |
299 |
Q |
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||||||||||| | || ||||||| |||||| || |||||||||||||||| ||||| ||| |||| |||||| | || ||| |||||||||||||| |
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| T |
36474832 |
aaaacttgtaaagattcgcatattttaaaaccaccatcgttattattacctctttctttgatgagttcatcaaacgagcggtctcttttaaactcattcc |
36474733 |
T |
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| Q |
300 |
aatctttaccccataaggcctccatcctccccatcccat |
338 |
Q |
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| T |
36474732 |
aatctttaccccataacacatccatcctccccatcccat |
36474694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 480
Target Start/End: Complemental strand, 36474665 - 36474581
Alignment:
| Q |
395 |
tcattgttggcagcatgcttcgaatcccacgccaccggtggatacaacctcatcgattcgcacaaacaagctttcaaatacttcat |
480 |
Q |
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||||||||||| |||||||| |||||||||| || |||||||||||||||| || || |||||||| |||| ||||| |||||| |
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| T |
36474665 |
tcattgttggcgacatgcttcaaatcccacgc-acaagtggatacaacctcattgactcacacaaacatgcttccaaatgcttcat |
36474581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 10337326 - 10337250
Alignment:
| Q |
121 |
aattgaagccacaacgtattccatttgaataaaagccatgtctttcccaagacaaactcttggaccggcctgaaaaa |
197 |
Q |
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|||||||||||| || |||| |||||||||||||||||| ||||| |||||||| || |||||||| |||||||||| |
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| T |
10337326 |
aattgaagccaccacatatttcatttgaataaaagccatttcttttccaagacacacccttggaccagcctgaaaaa |
10337250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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