View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_low_18 (Length: 422)
Name: NF6020_low_18
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 48 - 403
Target Start/End: Complemental strand, 38025340 - 38024985
Alignment:
| Q |
48 |
aatactgatcgggtatgcactgagaaacaaagatgtgaagaataaactttcctcattgaataatattgccgtttgatattacaaactttacatagtttat |
147 |
Q |
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| T |
38025340 |
aatactgatcgggtatgcactgagaaacaaagatatgaagaataaactttcctcattgaataatattgccgtttgatattacaaactttacatagtttat |
38025241 |
T |
|
| Q |
148 |
ctaatctaacatcactatataatataataattatatttacaaattaatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctctg |
247 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
38025240 |
ctaatctaacatcactatgtaatataataattatatttacaaattaatcaattaggaccccagcagctcaagtacatgacagtccttagagactcctctg |
38025141 |
T |
|
| Q |
248 |
cctgtttggccttcttgtcatccttaaatttggtagcaacaaatgaagaagaagagaaattctttgcttgagacattgatctaacacggtttttaaggtg |
347 |
Q |
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| T |
38025140 |
cttgtttggacttcttctcatccttaaatttggtagcaagaaatgaagaagaagagaaattctttgcttgagacattgatttagcacggtttttaaggtg |
38025041 |
T |
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| Q |
348 |
ttgttgagcttgtcttaaaccatagttccatctgcaaataccagcttggtctttca |
403 |
Q |
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| T |
38025040 |
ttgttgagcttgtcttaaagcatagttccacctacagataccagcttgatctttca |
38024985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 48 - 403
Target Start/End: Complemental strand, 38032064 - 38031725
Alignment:
| Q |
48 |
aatactgatcgggtatgcactgagaaacaaagat--gtgaagaataaactttcctcattgaataatattgccgtttgatattacaaactttacatagttt |
145 |
Q |
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| T |
38032064 |
aatactgatcgggtatgcactgagaaacatagatatgtgaagaataaactttcctcattgaataatattgccgtttaagattacaaaatttacataatta |
38031965 |
T |
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| Q |
146 |
atctaatctaacatcactatataatataataattatatttacaaattaatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctc |
245 |
Q |
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| T |
38031964 |
atataatctaacatcactatgtat------------------aagttaatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctc |
38031883 |
T |
|
| Q |
246 |
tgcctgtttggccttcttgtcatccttaaatttggtagcaacaaatgaagaagaagagaaattctttgcttgagacattgatctaacacggtttttaagg |
345 |
Q |
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| T |
38031882 |
tgcctgtttggccttcttctcatccttaagtttgttagcaagaaatgaagaagaagagaaattctttgcttgagaaattgatctaacacggtttttaagg |
38031783 |
T |
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| Q |
346 |
tgttgttgagcttgtcttaaaccatagttccatctgcaaataccagcttggtctttca |
403 |
Q |
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| T |
38031782 |
tgttgttgagcttgtcttaaaccatagttccatctgcaaataccagcttggtctttca |
38031725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 48 - 403
Target Start/End: Complemental strand, 38003819 - 38003474
Alignment:
| Q |
48 |
aatactgatcgggtatgcactgagaaacaaagat--gtgaagaataaactttcctcattgaataatatt------gccgtttgatattacaaactttaca |
139 |
Q |
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||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||| |
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| T |
38003819 |
aatactgatcgggtatgcactttgaaacatagatatgtgaagaataaactttcctcattgaataataatagtactgtagtttgatattacaaactttaca |
38003720 |
T |
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| Q |
140 |
tagtttatctaatctaacatcactatataatataataattatatttacaaattaatcaattaggaccccagcagctcaagtacatgacagtcctcaaaga |
239 |
Q |
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|| | ||||||||||| |||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
38003719 |
taaataatctaatctaatatcactatgta------------------caaattaatcaattgggaccccaacagctcaagtacatgacagtcctcaaaga |
38003638 |
T |
|
| Q |
240 |
ctcctctgcctgtttggccttcttgtcatccttaaatttggtagcaacaaatgaagaagaagagaaattctttgcttgagacattgatctaacacggttt |
339 |
Q |
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||||||||||||||| |||||||| |||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38003637 |
ctcctctgcctgttttgccttcttctcatccttaagtttgttagcaagaaatgaagaagaagagaaattctttgcttgagaaattgatctaacacggttt |
38003538 |
T |
|
| Q |
340 |
ttaaggtgttgttgagcttgtcttaaaccatagttccatctgcaaataccagcttggtctttca |
403 |
Q |
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||||||||||||||||||||||||||| |||| ||||| || |||||||||||||| ||||||| |
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| T |
38003537 |
ttaaggtgttgttgagcttgtcttaaagcataattccacctacaaataccagcttgatctttca |
38003474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 2912525 - 2912477
Alignment:
| Q |
194 |
atcaattaggaccccagcagctcaagtacatgacagtcctcaaagactc |
242 |
Q |
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||||||| |||||||||||||||||||||||||||||||| | |||||| |
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| T |
2912525 |
atcaatttggaccccagcagctcaagtacatgacagtcctaagagactc |
2912477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 38022110 - 38022056
Alignment:
| Q |
202 |
ggaccccagcagctcaagtacatgacagtcctcaaagactcctctgcctgtttgg |
256 |
Q |
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||||||||||| |||||| |||||||||| |||||||| ||||||| ||| |||| |
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| T |
38022110 |
ggaccccagcaactcaagaacatgacagttctcaaagattcctctgactgcttgg |
38022056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 38045148 - 38045095
Alignment:
| Q |
192 |
taatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctc |
245 |
Q |
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|||| |||| ||||||||||| |||||||||||||| |||||||||| ||||| |
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| T |
38045148 |
taattaattgggaccccagcaactcaagtacatgaccttcctcaaagattcctc |
38045095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 38069158 - 38069110
Alignment:
| Q |
199 |
ttaggaccccagcagctcaagtacatgacagtcctcaaagactcctctg |
247 |
Q |
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||||||||||| ||||| ||||||||||| || |||||||| ||||||| |
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| T |
38069158 |
ttaggaccccaacagcttaagtacatgactgttctcaaagattcctctg |
38069110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 16005531 - 16005483
Alignment:
| Q |
197 |
aattaggaccccagcagctcaagtacatgacagtcctcaaagactcctc |
245 |
Q |
| |
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|||| |||||||| ||||| ||||||||||| |||||||| |||||||| |
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| T |
16005531 |
aattgggaccccaacagcttaagtacatgaccgtcctcaatgactcctc |
16005483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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