View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_low_20 (Length: 412)
Name: NF6020_low_20
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 54105667 - 54105288
Alignment:
| Q |
18 |
tcatcacattgaactttgttctaatttcttgattaattcatttttgtgtgtgtcttattaggatagtcctggcacctttaacaagaacaaggtcattcaa |
117 |
Q |
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| T |
54105667 |
tcatcacattgaactttgttctaatttcttgattaattcatttttgtgtgtgtcttattaggatagtcctggcaccattaacaagaacaaggtcattcaa |
54105568 |
T |
|
| Q |
118 |
tttcgtggctcaaccacatgctgctctttattattctcaacgaacaacaaagggtggcttcttgattggggaagcctcaggggtctcagacactgcacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54105567 |
tttcgtggctcaaccacatgctgctctttattattctcaacgaacaacaaagggtggcttcttgattggggaagcctcaggggtctcagacactgcacaa |
54105468 |
T |
|
| Q |
218 |
gggtaatccaactaccctatttttggagtcaagctttattcttcttcccttgaatgtgtgcattcttaggggttcatactccctccgtccatgtatgtaa |
317 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54105467 |
gggtaatccaactaccctatttttggtgtcaagctttattcttcttcccttgaatgtgtgcattcttaggggttcatactccctccgtccatgtatgtaa |
54105368 |
T |
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| Q |
318 |
gcacccttaaaatggtgtttatatatagggacggaggtgtataaaataaatttaatgaacatcactatttttaaagagat |
397 |
Q |
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| T |
54105367 |
gcacccttaaaattgtgtttatatataaggacggaggggtataaaataaatttaatgaacatcactatttttaaagagat |
54105288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 2257591 - 2257623
Alignment:
| Q |
294 |
tactccctccgtccatgtatgtaagcaccctta |
326 |
Q |
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| T |
2257591 |
tactccctccgtccgtgtatgtaagcaccctta |
2257623 |
T |
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