View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_low_23 (Length: 409)
Name: NF6020_low_23
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 38919618 - 38920016
Alignment:
| Q |
1 |
atgcggtgaatttgcgccaaaaaatggaaccatcattacctttagaatcgtttggtaactatttgcgatttacaataacgattccgaagatgaatagtgg |
100 |
Q |
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| T |
38919618 |
atgcggtgaatttgcgccaaaaaatggaaccaccattacctttagaatcgtttggtaactatttgcgatttacaataacgattccgaagatgaatagtgg |
38919717 |
T |
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| Q |
101 |
agaagagtgttacgggttagcgaagcaagtgagagatgagataaagaagattgataaagaatatgtgaagaaggttcaagaaggtaaggagcatttggaa |
200 |
Q |
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| T |
38919718 |
agaagagtgttacgggttagcgaagcaagtgagagatgagataaagaagattgataaagaatatgtgaagaaggttcaagaaggtaaggagcatttggaa |
38919817 |
T |
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| Q |
201 |
tttcttaaggaaagttttgatagagtgattgtgaaggaggaattggttgtgtttaattttaccagtttgtgtaggtttcctttgtatgatgctgattttg |
300 |
Q |
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| T |
38919818 |
tttcttaaggaaagttttgatagagtgattgtgaaggaggaattggttgtgtttaattttaccagtttgtgtaggtttcctttgtatgatgctgattttg |
38919917 |
T |
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| Q |
301 |
gttgggggaaacctatttgggttggttcaactgctttgaattttaagaatttggttgtgtttgttgattgtaaggatgggggtggtattgaggcctatg |
399 |
Q |
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| T |
38919918 |
gttgggggaaacctatttgggttggttcaactgctttgaattttaagaatttggttgtgtttgttgattgtaaggatgggggtggtattgaggcctatg |
38920016 |
T |
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