View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6020_low_24 (Length: 384)
Name: NF6020_low_24
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_24 |
 | |
|
| [»] scaffold0164 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 38966206 - 38965883
Alignment:
| Q |
1 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38966206 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
38966107 |
T |
|
| Q |
101 |
ctgagctcactccagaaatccgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggagctgatccatgaggtggt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38966106 |
ctgagctcactccagaaatgcgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggacctgatccatgaggtggt |
38966007 |
T |
|
| Q |
201 |
taggaagcaacgagaattcctagattctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcaacagagtggaagc |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38966006 |
taggaagcaacgagaattcctagactctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcagcagagtggaagc |
38965907 |
T |
|
| Q |
301 |
cgagagagtgtgagggctcctcca |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38965906 |
cgagagagtgtgagggctcctcca |
38965883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 35600320 - 35600643
Alignment:
| Q |
1 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35600320 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
35600419 |
T |
|
| Q |
101 |
ctgagctcactccagaaatccgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggagctgatccatgaggtggt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35600420 |
ctgagctcactccagaaatgcgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggacctgatccatgaggtggt |
35600519 |
T |
|
| Q |
201 |
taggaagcaacgagaattcctagattctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcaacagagtggaagc |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35600520 |
taggaagcaacgagaattcctagactctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcagcagagtggaagc |
35600619 |
T |
|
| Q |
301 |
cgagagagtgtgagggctcctcca |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
35600620 |
cgagagagtgtgagggctcctcca |
35600643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 40656122 - 40656445
Alignment:
| Q |
1 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40656122 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
40656221 |
T |
|
| Q |
101 |
ctgagctcactccagaaatccgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggagctgatccatgaggtggt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40656222 |
ctgagctcactccagaaatgcgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggacctgatccatgaggtggt |
40656321 |
T |
|
| Q |
201 |
taggaagcaacgagaattcctagattctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcaacagagtggaagc |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40656322 |
taggaagcaacgagaattcctagactctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcagcagagtggaagc |
40656421 |
T |
|
| Q |
301 |
cgagagagtgtgagggctcctcca |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
40656422 |
cgagagagtgtgagggctcctcca |
40656445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 37364367 - 37364044
Alignment:
| Q |
1 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37364367 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
37364268 |
T |
|
| Q |
101 |
ctgagctcactccagaaatccgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggagctgatccatgaggtggt |
200 |
Q |
| |
|
||||||||||||| |||| |||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37364267 |
ctgagctcactcccaaaatgcgggatatgatcactaggttgactcaagaacagcttgtttcccatatgcaaacccaacaggacctgatccatgaggtggt |
37364168 |
T |
|
| Q |
201 |
taggaagcaacgagaattcctagattctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcaacagagtggaagc |
300 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
37364167 |
taggaagcaacaagaattcctagactctcagttggacacatttaggcaagagcaaggctggaataggaatgagcaaggtgttgggcagcagagtggaagc |
37364068 |
T |
|
| Q |
301 |
cgagagagtgtgagggctcctcca |
324 |
Q |
| |
|
||| | | |||||||||||||||| |
|
|
| T |
37364067 |
cgacaaaatgtgagggctcctcca |
37364044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 18334792 - 18334469
Alignment:
| Q |
1 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18334792 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
18334693 |
T |
|
| Q |
101 |
ctgagctcactccagaaatccgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggagctgatccatgaggtggt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18334692 |
ctgagctcactccagaaatgcgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggacctgatccatgaggtggt |
18334593 |
T |
|
| Q |
201 |
taggaagcaacgagaattcctagattctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcaacagagtggaagc |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18334592 |
taggaagcaacgagaattcctagactctcagttggacacatttaggcaagatcaaggctggaatatgaatgagcaaggtgttgggcagcagagtggaagc |
18334493 |
T |
|
| Q |
301 |
cgagagagtgtgagggctcctcca |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
18334492 |
cgagagagtgtgagggctcctcca |
18334469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 121 - 324
Target Start/End: Complemental strand, 38702990 - 38702787
Alignment:
| Q |
121 |
cgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggagctgatccatgaggtggttaggaagcaacgagaattcc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38702990 |
cgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccagcaggacctgatccatgaggtggttaggaagcaacgagaattcc |
38702891 |
T |
|
| Q |
221 |
tagattctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcaacagagtggaagccgagagagtgtgagggctcc |
320 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38702890 |
tagactctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcagcagagtggaagccgagagagtgtgagggctcc |
38702791 |
T |
|
| Q |
321 |
tcca |
324 |
Q |
| |
|
|||| |
|
|
| T |
38702790 |
tcca |
38702787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 4443882 - 4443559
Alignment:
| Q |
1 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4443882 |
cgattgtacggtgcaggaaacctagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
4443783 |
T |
|
| Q |
101 |
ctgagctcactccagaaatccgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggagctgatccatgaggtggt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4443782 |
ctgagctcactccagaaatgcgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggacctgatccatgaggtggt |
4443683 |
T |
|
| Q |
201 |
taggaagcaacgagaattcctagattctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcaacagagtggaagc |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4443682 |
taggaagcaacgagaattcctagactctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcagcagagtggaagc |
4443583 |
T |
|
| Q |
301 |
cgagagagtgtgagggctcctcca |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4443582 |
cgagagagtgtgagggctcctcca |
4443559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 13512234 - 13512557
Alignment:
| Q |
1 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13512234 |
cgattgtacggtgcaggaaacctagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
13512333 |
T |
|
| Q |
101 |
ctgagctcactccagaaatccgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggagctgatccatgaggtggt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
13512334 |
ctgagctcactccagaaatgcgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccagcaggacctgatccatgaggtggt |
13512433 |
T |
|
| Q |
201 |
taggaagcaacgagaattcctagattctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcaacagagtggaagc |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13512434 |
taggaagcaacgagaattcctagactctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcagcagagtggaagc |
13512533 |
T |
|
| Q |
301 |
cgagagagtgtgagggctcctcca |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
13512534 |
cgagagagtgtgagggctcctcca |
13512557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 161 - 324
Target Start/End: Original strand, 28694555 - 28694718
Alignment:
| Q |
161 |
cccatatgcaaacccaacaggagctgatccatgaggtggttaggaagcaacgagaattcctagattctcagttggacacatttaggcaagagcaaggctg |
260 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28694555 |
cccatatgcaaacccaacaggacctgatccatgaggtggttaggaagcaacgagaattcctagactctcagttggacacatttaggcaagagcaaggctg |
28694654 |
T |
|
| Q |
261 |
gaatatgaatgagcaaggtgttgggcaacagagtggaagccgagagagtgtgagggctcctcca |
324 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28694655 |
gaatatgaatgagcaaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctcca |
28694718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 10082356 - 10082306
Alignment:
| Q |
274 |
caaggtgttgggcaacagagtggaagccgagagagtgtgagggctcctcca |
324 |
Q |
| |
|
|||||||||||||| | ||||||||||||| | | |||||||||||||||| |
|
|
| T |
10082356 |
caaggtgttgggcagcggagtggaagccgacaaaatgtgagggctcctcca |
10082306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 33901838 - 33901517
Alignment:
| Q |
1 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33901838 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggttcttctcggcaac |
33901739 |
T |
|
| Q |
101 |
ctgagctcactccagaaatccgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggagctgatccatgaggtggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33901738 |
ctgagctcactccagaaatccgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggagctgatccatgaggtggt |
33901639 |
T |
|
| Q |
201 |
taggaagcaacgagaattcctagattctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcaacagagtggaagc |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||| |
|
|
| T |
33901638 |
taggaagcaacgagaattcctagactctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtggtgggcagcatagtggaagc |
33901539 |
T |
|
| Q |
301 |
cgagagagtgtgagggctcctc |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33901538 |
cgagagagtgtgagggctcctc |
33901517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 128 - 324
Target Start/End: Original strand, 26249191 - 26249387
Alignment:
| Q |
128 |
tgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggagctgatccatgaggtggttaggaagcaacgagaattcctagattc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26249191 |
tgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggacctgatccatgaggtggttaggaagcaacgagaattcctagactc |
26249290 |
T |
|
| Q |
228 |
tcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcaacagagtggaagccgagagagtgtgagggctcctcca |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26249291 |
tcagttggacacatttaggcaagagcaaggcttgaatatgaatgagcaaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctcca |
26249387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 33887294 - 33886971
Alignment:
| Q |
1 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33887294 |
cgattgtacggtgcaggaaacctagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
33887195 |
T |
|
| Q |
101 |
ctgagctcactccagaaatccgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggagctgatccatgaggtggt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
33887194 |
ctgagctcactccagaaatgcgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccagcaggacctgatccatgaggtggt |
33887095 |
T |
|
| Q |
201 |
taggaagcaacgagaattcctagattctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcaacagagtggaagc |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33887094 |
taggaagcaacgagaattcctagactctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcagcagagtggaagc |
33886995 |
T |
|
| Q |
301 |
cgagagagtgtgagggctcctcca |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33886994 |
cgagagagtgtgagggctcctcca |
33886971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 37567686 - 37567430
Alignment:
| Q |
1 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37567686 |
cgattgtacggtgcaggaaacttagctggaaacttccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
37567587 |
T |
|
| Q |
101 |
ctgagctcactccagaaatccgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggagctgatccatgaggtggt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37567586 |
ctgagctcactccagaaatgcgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggacctgatccatgaggtggt |
37567487 |
T |
|
| Q |
201 |
taggaagcaacgagaattcctagattctcagttggacacatttaggcaagagcaagg |
257 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37567486 |
taggaagcaacgagaattcctagactctcagttggacacatttaggcaagagcaagg |
37567430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 37567437 - 37567384
Alignment:
| Q |
271 |
gagcaaggtgttgggcaacagagtggaagccgagagagtgtgagggctcctcca |
324 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37567437 |
gagcaaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctcca |
37567384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 34676866 - 34676544
Alignment:
| Q |
1 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34676866 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgttggggagggctcttctcggcaac |
34676767 |
T |
|
| Q |
101 |
ctgagctcactccagaaatccgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggagctgatccatgaggtggt |
200 |
Q |
| |
|
||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34676766 |
ctgagctcactcccgaaatgcgggatatgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggacctgatccatgaggtggt |
34676667 |
T |
|
| Q |
201 |
taggaagcaacgagaattcctagattctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcaacagagtggaagc |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34676666 |
taggaagcaacgagaattcctagactctcagttggaca-atttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcagcagagtggaagc |
34676568 |
T |
|
| Q |
301 |
cgagagagtgtgagggctcctcca |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
34676567 |
cgagagagtgtgagggctcctcca |
34676544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 43 - 324
Target Start/End: Original strand, 1 - 282
Alignment:
| Q |
43 |
ggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaacctgagctcactccagaaatccgggatctgatcactaggttga |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1 |
ggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaacctgagctcactccagaaatgcgggatctgatcactaggttga |
100 |
T |
|
| Q |
143 |
ctcaagaacagcttgctgcccatatgcaaacccaacaggagctgatccatgaggtggttaggaagcaacgagaattcctagattctcagttggacacatt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
101 |
ctcaagaacagcttgctgcccatatgcaaacccaacaggacctgatccatgaggtggttaggaagcaacgagaattcctagactctcagttggacacatt |
200 |
T |
|
| Q |
243 |
taggcaagagcaaggctggaatatgaatgagcaaggtgttgggcaacagagtggaagccgagagagtgtgagggctcctcca |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
201 |
taggcaagagcaaggctggaatatgaatgagcaaggtattaggcagcagagtggaagccgagagagtgtgagggctcctcca |
282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 9764092 - 9764415
Alignment:
| Q |
1 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttctcggcaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9764092 |
cgattgtacggtgcaggaaacttagctggaaactaccgcaagggtgttgctaccactctaaagttgacccttaatgctggggagggctcttgtcggcaac |
9764191 |
T |
|
| Q |
101 |
ctgagctcactccagaaatccgggatctgatcactaggttgactcaagaacagcttgctgcccatatgcaaacccaacaggagctgatccatgaggtggt |
200 |
Q |
| |
|
||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
9764192 |
ctgagctcactcccgaaatgcgggatatgatcactaggttgactcaagaacagcttgctgcccaaatgcaaacccaacaagagctgatccagaaggtggt |
9764291 |
T |
|
| Q |
201 |
taggaagcaacgagaattcctagattctcagttggacacatttaggcaagagcaaggctggaatatgaatgagcaaggtgttgggcaacagagtggaagc |
300 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| || ||| ||||| |
|
|
| T |
9764292 |
taggaagcaacaagaattcctagactctcagttggacacatttaggcaagaacaaggctggaataggaatgagcaaggtgttgggcagcatagtagaagc |
9764391 |
T |
|
| Q |
301 |
cgagagagtgtgagggctcctcca |
324 |
Q |
| |
|
||| | | |||||||||||||||| |
|
|
| T |
9764392 |
cgacaaaatgtgagggctcctcca |
9764415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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