View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_low_25 (Length: 359)
Name: NF6020_low_25
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 32541334 - 32541680
Alignment:
| Q |
1 |
tcaatgtcccatcaagactatttttatgaaaaaagttattgcaaggtaaaagatgctagacccctggtgagtgcaaaacatagctaattgtacaattttt |
100 |
Q |
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| T |
32541334 |
tcaatgtcccatcaagactatttttatgaaaaaagttattgcaaggtaaaagatgctagacccctggtgagtgcaaaacatagctaattgtacaattttt |
32541433 |
T |
|
| Q |
101 |
atgaaatttgtatcctagaagattagaaatctcaagaaaaaatgctctaattcattacggttcgaagttctaacaagtaatgcctgttattaacaaca-a |
199 |
Q |
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| T |
32541434 |
atgaaatttgtatcctagaagattagaaatctcaagaaaaaatgctctaattcattacggttcgaagttctaacaagtaatgcctgttattaacaacaca |
32541533 |
T |
|
| Q |
200 |
actcttcctgaaactcaatcagttgcgtaatgttattttgtactgttggaaacatgaaacagccaagaagaattcgtgcacgtattagtaattaagcttt |
299 |
Q |
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| T |
32541534 |
actc-tcctgaaactcaatcagttgcataatgttattttgtactgtcggaaacatgaaacagccaagaagaattcgtgcacgtattagtaattaagcttt |
32541632 |
T |
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| Q |
300 |
acaaaaatatgactagtaaatcattttaaagaattgagtcaactccta |
347 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32541633 |
acaaaaatatgactagtaaatcattttacagaattgagtcaactccta |
32541680 |
T |
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