View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_low_3 (Length: 781)
Name: NF6020_low_3
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_3 |
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| [»] scaffold0037 (6 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 88; Significance: 7e-42; HSPs: 6)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 571 - 682
Target Start/End: Original strand, 104676 - 104787
Alignment:
| Q |
571 |
aaattaagaaactggtaaatttatgttccaacatcttgcgtgacattgacaactgttgcattttttcttttgttaaaacatctcttctttgtgttgcttt |
670 |
Q |
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| T |
104676 |
aaattaggaaactggtaaatttatgtcccaacatcttgcgtgtcattgacaactgttgcatttttgcttttgttaaaacatcttgtctttgtgttgcttt |
104775 |
T |
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| Q |
671 |
gctgcttttgta |
682 |
Q |
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| T |
104776 |
gctgcttttgta |
104787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 365 - 423
Target Start/End: Original strand, 104162 - 104220
Alignment:
| Q |
365 |
aagggataatgtatttggattttagcagtgaatatgttaggattttagcagactcttga |
423 |
Q |
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| T |
104162 |
aagggataatgtataaggattttagcagtaaatatgttaggattttagcagactcttga |
104220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 571 - 658
Target Start/End: Complemental strand, 30323 - 30236
Alignment:
| Q |
571 |
aaattaagaaactggtaaatttatgttccaacatcttgcgtgacattgacaactgttgcattttttcttttgttaaaacatctcttct |
658 |
Q |
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| T |
30323 |
aaattaagaaacttgcaaatttatgtccgaacatattgcgtgtcattgataagtgttgcatttttgctttggttaaaacatcttttct |
30236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 532 - 575
Target Start/End: Complemental strand, 31007 - 30964
Alignment:
| Q |
532 |
tcacttttattacaacaatcatacaggagtatatcatagaaatt |
575 |
Q |
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| T |
31007 |
tcacttttattacaagaatcatacacgagtatatcatagaaatt |
30964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 391 - 428
Target Start/End: Complemental strand, 31291 - 31254
Alignment:
| Q |
391 |
agtgaatatgttaggattttagcagactcttgaattgt |
428 |
Q |
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| T |
31291 |
agtgaatatgttaggattttagcagactcttgatttgt |
31254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 706 - 771
Target Start/End: Original strand, 104939 - 105004
Alignment:
| Q |
706 |
aaaaggtcgggaagtttgcaacacctttcttctgaatacttaacttagacttggacctatgctact |
771 |
Q |
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| T |
104939 |
aaaaggtcaagaagtttgcaacgcttttctcgtgaatacttaactgagacttggacctatgttact |
105004 |
T |
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Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 697 - 771
Target Start/End: Original strand, 14200380 - 14200455
Alignment:
| Q |
697 |
tcttcaagt-aaaaggtcgggaagtttgcaacacctttcttctgaatacttaacttagacttggacctatgctact |
771 |
Q |
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| T |
14200380 |
tcttcaagtgaaaaggtcgggaagtttgcaacacctttctcgtgaatacttaactgagacttggacctatgttact |
14200455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 365 - 423
Target Start/End: Original strand, 14199837 - 14199895
Alignment:
| Q |
365 |
aagggataatgtatttggattttagcagtgaatatgttaggattttagcagactcttga |
423 |
Q |
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| T |
14199837 |
aagggataatgtattaggattttagccgtgaatatgttagaattttagtagactcttga |
14199895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 616 - 682
Target Start/End: Original strand, 14200172 - 14200238
Alignment:
| Q |
616 |
ttgacaactgttgcattttttcttttgttaaaacatctcttctttgtgttgctttgctgcttttgta |
682 |
Q |
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| T |
14200172 |
ttgacaacggtttcatttttgcttttgttaaaacatattttctttgtgtggctttgctgcttttgta |
14200238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 430 - 473
Target Start/End: Original strand, 14200127 - 14200170
Alignment:
| Q |
430 |
agattaatttagaaactctgtcaatatctaacaatattagtgtc |
473 |
Q |
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| T |
14200127 |
agattaatttagaaactctgtaaatatctaacaatatgagtgtc |
14200170 |
T |
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