View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_low_35 (Length: 287)
Name: NF6020_low_35
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 268
Target Start/End: Complemental strand, 32770615 - 32770349
Alignment:
| Q |
10 |
attatacttagttttaacaaaatcataatcctatcataattttgtgttcatatacattcactagtgccaa--------tgaatcttatgttattattaga |
101 |
Q |
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| T |
32770615 |
attatacttagttttaacaaaatcataatcctatcataattttgtgttcatatacattcactagtgccaaactgccaatgaatcttatgttattattaga |
32770516 |
T |
|
| Q |
102 |
tatttgagatagtgtgatatgattcattcaaatgatgaatcctatgatcaaaggcaatggagttggggtgtgaatgcttgtttgtgaagtactcaagtct |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32770515 |
tatttgagatagtgtgatatgattcattcaaatgatgaatcctatgatcaaagggaatggagttggggtttgaatgcttgtttgtgaagtactcaagtct |
32770416 |
T |
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| Q |
202 |
caaggttcttgtttttgttcagcagaaaagggaaaatgatatgcgtgcacgagtcttttgacagatc |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32770415 |
caaggttcttgtttttgttcagcagaaaagggaaaatgatatgcgtgcacgagtcttttgacagatc |
32770349 |
T |
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