View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_low_36 (Length: 286)
Name: NF6020_low_36
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 33093318 - 33093596
Alignment:
| Q |
1 |
attgattcgttggtgagtttgaaacacttaacccatcttgatttgtcactttcatgtgttactgatgatatgcttatatgtgtagcaaatgaagatcttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
33093318 |
attgattcgttggtgagtttgaaacacttaacccatcttgatttgtcactttcatgtgttactgatgatatgcttatctctgtagcaaatgaagatcttc |
33093417 |
T |
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| Q |
101 |
ctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatcttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33093418 |
ctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatcttca |
33093517 |
T |
|
| Q |
201 |
aaaggcaaagtttttgaatgatgatgacaactcctcaatgttgtatccatatcttcgcgatttggtgtctataaatgtc |
279 |
Q |
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| T |
33093518 |
aaatgcaaagtttttgaatgatgatgacaactcctcaatgttgtatccatatcttcgcgatttggtgtctataaatgtc |
33093596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 33708500 - 33708626
Alignment:
| Q |
96 |
tcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaat |
195 |
Q |
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||||||||| ||||| |||||||| |||| | ||||| ||||||| ||| ||| ||||||| |||||||||||||||| ||| | ||||||||||| || |
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| T |
33708500 |
tcttcctttgaggaaacttgtcctccaaggtcgctgccaatatacttataccggtatctcttgtttcttgtcaaagtgtcgatctctgcagcatctagat |
33708599 |
T |
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| Q |
196 |
cttcaaaaggcaaagtttttgaatgat |
222 |
Q |
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| T |
33708600 |
attcaacgtgcaaagtttttgaatgat |
33708626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 36810493 - 36810625
Alignment:
| Q |
90 |
tgaagatcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcat |
189 |
Q |
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||||| ||||||||| ||| | ||| |||| |||||||||| | | ||||||||| |||||||||||| | ||||||||||| ||||| | |||| | |
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| T |
36810493 |
tgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatgggatctcttatctactgtcaaagtgtcgatttctacagctt |
36810592 |
T |
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| Q |
190 |
ctaaatcttcaaaaggcaaagtttttgaatgat |
222 |
Q |
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||| |||||||| | |||||||||||||||||| |
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| T |
36810593 |
ctagatcttcaagatgcaaagtttttgaatgat |
36810625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 33714390 - 33714461
Alignment:
| Q |
151 |
atctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatcttcaaaaggcaaagtttttgaatgat |
222 |
Q |
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| T |
33714390 |
atctcttgtttcttgtcaaattgtcgatctctgcagcatctagatcttcaatgtgcaaagtttttgaatgat |
33714461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 37580306 - 37580429
Alignment:
| Q |
99 |
tcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatctt |
198 |
Q |
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|||||| ||||| |||||||| ||||||||| | | || ||||||| ||||| | |||||| |||||||||||| || || |||||||| || || |
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| T |
37580306 |
tcctttgaggaaacttgtcctcaaagattgctccaactacacatattctgggatatattatttattgtcaaagtgtcaatcactgaagcatctagatatt |
37580405 |
T |
|
| Q |
199 |
caaaaggcaaagtttttgaatgat |
222 |
Q |
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||||| |||| ||||||||||||| |
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| T |
37580406 |
caaaaagcaacgtttttgaatgat |
37580429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 18723872 - 18723944
Alignment:
| Q |
147 |
cgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatcttcaaaaggcaaagtttttgaat |
219 |
Q |
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||||||||||||| |||||||||||||| ||||| |||| |||||| ||||| |||| |||| ||||||||| |
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| T |
18723872 |
cgggatctcttatctcttgtcaaagtgtcgatttctgcaacatctagatctttaaaatgcaatctttttgaat |
18723944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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