View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_low_38 (Length: 280)
Name: NF6020_low_38
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 7711319 - 7711573
Alignment:
| Q |
8 |
ccaagaatatacatacaaacaatcttaaagtgcatttttaaagaatttcaaacaatttaaggctagaccattttgttgtttctctacacgtctaatccga |
107 |
Q |
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| T |
7711319 |
ccaaaaatatacatacaaacaatcttaaagtacatttttaaagaatttcaaacaatttaaggctagaccgttttgttgtttctctacacgtttaatccga |
7711418 |
T |
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| Q |
108 |
ggagggtctctgcttcatagtatgaaactctttattgtgcaatcaatgactgtatgtaatttgtatcgtaatatttaaacacaacttgcactcgttaatc |
207 |
Q |
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| T |
7711419 |
ggaggatctatgcttcatagtatgaaactctttattgtgcaatcaatgactataagtaatttgtatcgtaatatttaaacacaacttgcactcgttaatc |
7711518 |
T |
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| Q |
208 |
caaagtattgcataatagaatactacgacatccacttcattgtcagagatgtagg |
262 |
Q |
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| T |
7711519 |
caaagtattgcataatagaatactacaacatccacttcattgtcagagatgtagg |
7711573 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 1433544 - 1433594
Alignment:
| Q |
93 |
acacgtctaatccgaggagggtctctgcttcatagtatgaaactctttatt |
143 |
Q |
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| T |
1433544 |
acacgtctaatccgaggagtgtccgtgcttcatagcatgtaactctttatt |
1433594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 30103331 - 30103295
Alignment:
| Q |
93 |
acacgtctaatccgaggagggtctctgcttcatagta |
129 |
Q |
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| T |
30103331 |
acacatctaatccgaggagtgtctctgcttcatagta |
30103295 |
T |
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