View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_low_4 (Length: 732)
Name: NF6020_low_4
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 314 - 639
Target Start/End: Complemental strand, 4460522 - 4460197
Alignment:
| Q |
314 |
aactgtcgtagagctttgaatatgaacatggattgcttcaccactaagactgtggaacaaacaagtaatgtcatcgcacacaattcagaaagcaaaatat |
413 |
Q |
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| T |
4460522 |
aactgttgtagagctttgaatatgaacatgaattgcttcaccactaagactgaggaactaacaagtaatgtcatcgcacacaattcagaaagcaaaatat |
4460423 |
T |
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| Q |
414 |
caaatatatagtttttgcttttgcactttcttattttattttactcttaaaaatttgctcaatgttgaaattgatctctaatgtatgtgacatattcatt |
513 |
Q |
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| T |
4460422 |
caaatatatagtttttgcttttgcactttcttattttattttactcttaaaaatttgctcaatgttgaaattgatctctaatgtatgtgacatattcatt |
4460323 |
T |
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| Q |
514 |
ttaatctttatgcatgtagttgatttagaaagaattaaattaaatgttcaacctttagaagcatcagatccaacataaacatggactacaacacacaact |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4460322 |
ttaatctttatgcatgtagttgatttagaaagaattaaattaaatgttcaacctttagaagcatcagatccaacataaacatggactacaacacacaact |
4460223 |
T |
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| Q |
614 |
gcaaggattaaaagcaagtacataaa |
639 |
Q |
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| T |
4460222 |
gcaaggattaaaagcaagtacataaa |
4460197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 634 - 715
Target Start/End: Complemental strand, 4459805 - 4459724
Alignment:
| Q |
634 |
cataaaatgaggatgtgttcttcacaatgctgaattttgtgaacaattttttaatcattttagaattttaaaatgaggatgt |
715 |
Q |
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| T |
4459805 |
cataaaatgaggatgtgttcttcacaatgctgaattttgtgaacttgtttttaatcattttagaattttaaaatgaggatgt |
4459724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 17478049 - 17477739
Alignment:
| Q |
1 |
ggggaaagaaatcaagacaggctttcaccacgttgttcaagttgtacatgctgaaaacatggctgaatgtgattccagtagtgtgaagatactcaagatc |
100 |
Q |
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||||||||| ||||||| | |||| |||||| |||| |||||| |||||| ||||||| |||| |||||||||||| ||| ||| ||| |||||||||| |
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| T |
17478049 |
ggggaaagacatcaagatacgcttccaccacattgtgcaagttatacatggtgaaaacttggccgaatgtgattccggtaatgttaaggtactcaagatt |
17477950 |
T |
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| Q |
101 |
aggcgcatttatttcaaggcaagccccaacatcattctcaatggcgatcgtcagccgttttaaggaagttgggatgcaaactgtgtccaagcgatccgca |
200 |
Q |
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| T |
17477949 |
cggtgcatttatttcaaggtaagccccaacaacatttgctacggtgattttaagccttttcaagggaggtgggatgcaaactttgtctaagctttgcgga |
17477850 |
T |
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| Q |
201 |
gaaaagcaaagatccagagtttcaatgacagagcagccacggagaagtgcattcactgaagacacttccacgataccgatattgattagcagcaccttga |
300 |
Q |
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| T |
17477849 |
gaaaagccaagattcagagattctatatttgggcagccacagaggagtgcattaatggaaggtacttccatatgaccaatattgattagcagcatcttta |
17477750 |
T |
|
| Q |
301 |
gtgacagtaaa |
311 |
Q |
| |
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||||| ||||| |
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| T |
17477749 |
gtgacggtaaa |
17477739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 29585353 - 29585487
Alignment:
| Q |
1 |
ggggaaagaaatcaagacaggctttcaccacgttgttcaagttgtacatgctgaaaacatggctgaatgtgattccagtagtgtgaagatactcaagatc |
100 |
Q |
| |
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||||||||| ||||||| | |||| ||| || |||| |||||||||||||||||| | |||| |||||||||| ||| ||| ||| ||||||||||| |
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| T |
29585353 |
ggggaaagacatcaagatacgcttccacgactttgtgtaagttgtacatgctgaaatcctggccaaatgtgattcgggtaatgttaaggtactcaagatc |
29585452 |
T |
|
| Q |
101 |
aggcgcatttatttcaaggcaagccccaacatcat |
135 |
Q |
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| T |
29585453 |
aggcgcatttatttcaaggtaaaccccaacttcat |
29585487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 4427658 - 4427819
Alignment:
| Q |
21 |
gctttcaccacgttgttcaagttgtacatgctgaaaacatggctgaatgtgattccagtagtgtgaagatactcaagatcaggcgcatttatttcaaggc |
120 |
Q |
| |
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|||| |||||| |||| ||||||||||||||| ||||| | || | |||||||||| | ||| ||| ||||||||||| || || || ||||||||| |
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| T |
4427658 |
gcttccaccacattgtgcaagttgtacatgctaaaaacttcgccggatgtgattccgttgatgtaaaggtactcaagatccggtgctttcatttcaaggt |
4427757 |
T |
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| Q |
121 |
aagccccaacatcattctcaatggcgatcgtcagccgttttaaggaagttgggatgcaaact |
182 |
Q |
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| T |
4427758 |
aagccccaacttcattatcaatgatgattgtcaaccttttcaaagaaggtgggacgcaaact |
4427819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 2 - 268
Target Start/End: Complemental strand, 8341103 - 8340837
Alignment:
| Q |
2 |
gggaaagaaatcaagacaggctttcaccacgttgttcaagttgtacatgctgaaaacatggctgaatgtgattccagtagtgtgaagatactcaagatca |
101 |
Q |
| |
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|||||||| ||||||| | |||| |||||||||| |||| |||||| ||||||| | | || |||||||||| ||| ||| ||| || | |||||| |
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| T |
8341103 |
gggaaagacatcaagatacgcttccaccacgttgggcaagctgtacaagctgaaaccttcgccgaatgtgatttgggtaatgttaaggtattgaagatcc |
8341004 |
T |
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| Q |
102 |
ggcgcatttatttcaaggcaagccccaacatcattctcaatggcgatcgtcagccgttttaaggaagttgggatgcaaactgtgtccaagcgatccgcag |
201 |
Q |
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|||||||||| ||| | | |||| ||||||||||||||||||| ||| ||| || ||| ||||||| |||| |||||| | ||||||| | || | |
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| T |
8341003 |
ggcgcatttacttccaagtaagctccaacatcattctcaatggtgattttcaaccttttcaaggaaggcgggacacaaactttatccaagctttgggctg |
8340904 |
T |
|
| Q |
202 |
aaaagcaaagatccagagtttcaatgacagagcagccacggagaagtgcattcactgaagacacttc |
268 |
Q |
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|||||| |||||||||| |||| || ||||||||| |||||||||||||| ||||| ||||| |
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| T |
8340903 |
aaaagccaagatccagaatttctatacttgagcagccatcaagaagtgcattcacagaagatacttc |
8340837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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