View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_low_44 (Length: 256)
Name: NF6020_low_44
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_44 |
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| [»] scaffold0175 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: scaffold0175 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 124 - 256
Target Start/End: Complemental strand, 27941 - 27809
Alignment:
| Q |
124 |
tgcattttactcttctttttactaacgaaagatgtcttctttccaatagtaaagagatattggggattggaattttgaagtttgtcctgttacaggctca |
223 |
Q |
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| T |
27941 |
tgcattttactcttctttttactaacgaaatatgccttctttccaatagaaaagagatattagggattggaattttgaagttcgtcctgttacaggctca |
27842 |
T |
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| Q |
224 |
tagctatagtatttacttttacaaatgattcat |
256 |
Q |
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| T |
27841 |
tagctatagtatttaattttacaaatgattcat |
27809 |
T |
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Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 124 - 256
Target Start/End: Original strand, 29276309 - 29276440
Alignment:
| Q |
124 |
tgcattttactcttctttttactaacgaaagatgtcttctttccaatagtaaagagatattggggattggaattttgaagtttgtcctgttacaggctca |
223 |
Q |
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| T |
29276309 |
tgcattttactcttctttttactaaagaaatatgccttctt-ccaatagaaaagagatgttggggattagaattttgaagtttgtcgtgttacatgctca |
29276407 |
T |
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| Q |
224 |
tagctatagtatttacttttacaaatgattcat |
256 |
Q |
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| T |
29276408 |
tagctatagtatttacttttacaaatgattcat |
29276440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 29276167 - 29276273
Alignment:
| Q |
18 |
ctccaataatatatcaatataagatgggacatgtctataccgtataaagtcttgtgatgatccattaattatatttcaagctcttcctttaggaatatga |
117 |
Q |
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| T |
29276167 |
ctccaataatatatcaatataagatgggacatgtctataccgtataaagtcttgtgatgatccat---atatatttcaagctcttcccttaggaatatga |
29276263 |
T |
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| Q |
118 |
tactattgca |
127 |
Q |
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| T |
29276264 |
tactattgca |
29276273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 55858422 - 55858319
Alignment:
| Q |
21 |
caataatatatcaatataagatgggacatgtctataccgtataaagtcttgtgatgatccattaattatatttcaagctcttcctttaggaatatgatac |
120 |
Q |
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| T |
55858422 |
caataatatatcaatataagatgggacatgtctataccgtataaagtcttgtgatgatccat---atatatttcaagctcttaccttaggaatatgatac |
55858326 |
T |
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| Q |
121 |
tattgca |
127 |
Q |
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| T |
55858325 |
tattgca |
55858319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 55858252 - 55858160
Alignment:
| Q |
164 |
ttccaatagtaaagagatattggggattggaattttgaagtttgtcctgttacaggctcatagctatagtatttacttttacaaatgattcat |
256 |
Q |
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| T |
55858252 |
ttccaatagaaaagagatatcggggattagaattttgaagtttgtcgtgttacatgctcatagctatagtatttacttttacaaatgattcat |
55858160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 31502811 - 31502728
Alignment:
| Q |
18 |
ctccaataatatatcaatataagatgggacatgtctataccgtataaagtct--tgtgatgatccattaattatatttcaagctctt |
102 |
Q |
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| T |
31502811 |
ctccaataatatatcaatataggatgggacatgtctacaccgtataaagtcttgtgtgatgatccat---atatatttcaagctctt |
31502728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 31502677 - 31502648
Alignment:
| Q |
124 |
tgcattttactcttctttttactaacgaaa |
153 |
Q |
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| T |
31502677 |
tgcattttactcttctttttactaacgaaa |
31502648 |
T |
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