View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6020_low_5 (Length: 630)

Name: NF6020_low_5
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6020_low_5
NF6020_low_5
[»] chr2 (1 HSPs)
chr2 (1-614)||(34566926-34567521)
[»] scaffold0012 (1 HSPs)
scaffold0012 (100-442)||(111036-111381)
[»] chr8 (3 HSPs)
chr8 (100-442)||(24782912-24783257)
chr8 (100-442)||(35197735-35198080)
chr8 (393-433)||(26619082-26619122)
[»] chr1 (7 HSPs)
chr1 (100-442)||(49574765-49575110)
chr1 (100-442)||(8057085-8057430)
chr1 (100-442)||(46021129-46021474)
chr1 (393-437)||(5306521-5306565)
chr1 (395-437)||(50954863-50954905)
chr1 (393-434)||(23947497-23947538)
chr1 (393-442)||(36027750-36027799)
[»] chr3 (2 HSPs)
chr3 (393-442)||(54814606-54814655)
chr3 (393-442)||(46426349-46426398)


Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 614
Target Start/End: Complemental strand, 34567521 - 34566926
Alignment:
Q  1 atttgaggaccagaactaactgcatgcattcgcttccaatattgaacttccacctgatcaaggattatatggataatatctctatacgaataacagagat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||    
T  34567521 atttgaggaccagaactaactgcatgcattcgcttccaatattgaacttccacctgatcaagaattatatggataatatctctatacgaataacaaaaat 34567422  T
Q  101 aaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgca 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34567421 aaggggagagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgca 34567322  T
Q  201 atgatggattgtttgaatgacattagggggaatttacactccttcaaatagttctccacaaattcccaattgatgtgatcataatctctcggtatcagtt 300  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||                
T  34567321 atgatggattgtttgaatgagattagggggaatttacactcctccaaatagttctccacaaatttccaattgctgtgatcataatctcc----------- 34567233  T
Q  301 ttaattgacaagaacatattgcttcttttcatcttagtcatggagtgaaccattttctgagaaataataatatatggtgtttacttctttcatggaataa 400  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  34567232 -------acaagaacatattgcttcttttcatcttagtcatggagtgaaccattttctgagaaacaataatatatggtgtttacttctctcatggaataa 34567140  T
Q  401 aactagactggtatggagaaataataccatcaagcaacggctcaattttaaaaatcatcactacaagagtattattaatgtaagagataagaaaaggatt 500  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34567139 aattagactggtatggagaaataataccatcaagcaacggctcaattttagaaatcatcactacaagagtattattaatgtaagagataagaaaaggatt 34567040  T
Q  501 aaccaaaacatggttcacataccggtacaatgactcagaaatagtgttccaacattattagaagaaaagagcagggtacccgtcttctccaggcgtctta 600  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34567039 aaccaaaacatggttcacatactggtacaatgactcagaaatagtgttccaacattattagaagaaaagagcagggtacccgtcttctccgggcgtctta 34566940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 100 - 442
Target Start/End: Original strand, 111036 - 111381
Alignment:
Q  100 taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc 199  Q
    ||||||| |||||||||||||| ||||||||||||||| ||  |||||||||||||||  || |||||||||| |||||||||  ||||  |||||||||    
T  111036 taaggggagagagggtctccttgatgaattcctctagttggagtgaaagtgtcagttttgtctccattccacaaaattttgtaactaggcgaagatatgc 111135  T
Q  200 aatgatggattgtttgaatgacattagg-gggaatttacactccttcaaatagttctccacaaattcccaattgatgtgatcataatctctcggta--tc 296  Q
    ||| | ||||  || |||||| |||||| ||||||||||| |||| |||  | ||||||||||| | |||||||||| |||||||| || |   ||  ||    
T  111136 aatcacggataattcgaatgagattaggagggaatttacaatcctccaagcaattctccacaaaattccaattgatgcgatcataagctttttctaggtc 111235  T
Q  297 agttttaattgacaagaacatattgcttcttttcatcttagtcatggagtgaaccattttctgagaaataataata-tatggtgtttacttctttcatgg 395  Q
    | |||| || |||| |||||| ||| | | ||||||  ||| |||||| || ||||| | |||||  | ||||||| |||||||  |||||| | | |||    
T  111236 aattttgatggacatgaacatcttgttgcctttcattctagccatggaatgtaccatctcctgagcgacaataatattatggtggatacttc-tacctgg 111334  T
Q  396 aataaaactagactggtatggagaaataataccatcaagcaacggct 442  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  111335 aataaaactggactgatatggagaaataataccatcaagcaaaggct 111381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 100 - 442
Target Start/End: Complemental strand, 24783257 - 24782912
Alignment:
Q  100 taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc 199  Q
    ||||||| |||||| ||||||| | ||||||||||||| ||  |||| |||||||||| |||||||||||||| |||||||||  ||||  |||||||||    
T  24783257 taaggggagagaggatctccttgacgaattcctctagttggagtgaacgtgtcagttttatccccattccacaaaattttgtaactaggcgaagatatgc 24783158  T
Q  200 aatgatggattgtttgaatgacattagg-gggaatttacactccttcaaatagttctccacaaattcccaattgatgtgatcataatctctcggta--tc 296  Q
    ||| | | ||  ||||||||| |||||| ||||||||||| |||| |||  | ||||||||||| | |||||||||| |||||||| || |   ||  ||    
T  24783157 aatcacgtataatttgaatgagattaggagggaatttacaatcctccaagcaattctccacaaaattccaattgatgcgatcataagctttttctaggtc 24783058  T
Q  297 agttttaattgacaagaacatattgcttcttttcatcttagtcatggagtgaaccattttctgagaaataataata-tatggtgtttacttctttcatgg 395  Q
    | |||| || |||| |||||| ||| | | ||||||  | | |||||| || ||||| | |||||  | ||||||| |||||||  |||||| | | |||    
T  24783057 aattttgatggacatgaacatcttgttgcctttcattctggccatggaatgtaccatctcctgagccacaataatattatggtggatacttc-tacctgg 24782959  T
Q  396 aataaaactagactggtatggagaaataataccatcaagcaacggct 442  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  24782958 aataaaactggactgatatggagaaataataccatcaagcaatggct 24782912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 100 - 442
Target Start/End: Original strand, 35197735 - 35198080
Alignment:
Q  100 taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc 199  Q
    ||||||| |||||| ||||||| | ||||||||||||| ||  |||| |||||||||| |||||||||||||| |||||||||  ||||  |||||||||    
T  35197735 taaggggagagaggatctccttgacgaattcctctagttggagtgaacgtgtcagttttatccccattccacaaaattttgtaactaggcgaagatatgc 35197834  T
Q  200 aatgatggattgtttgaatgacattag-ggggaatttacactccttcaaatagttctccacaaattcccaattgatgtgatcataatctctcggta--tc 296  Q
    ||| | | ||  ||||||||| |||||  ||||||||||| |||| |||  | ||||||||||| | |||||||||| |||||||| || |   ||  ||    
T  35197835 aatcacgtataatttgaatgagattagtagggaatttacaatcctccaagcaattctccacaaaattccaattgatgcgatcataagctttttctaggtc 35197934  T
Q  297 agttttaattgacaagaacatattgcttcttttcatcttagtcatggagtgaaccattttctgagaaataataata-tatggtgtttacttctttcatgg 395  Q
    | |||| ||||||| |||||| ||| | | ||||||  | | |||||| || ||||| | |||||  | ||||||| |||||||  |||||| | | |||    
T  35197935 aattttgattgacatgaacatcttgttgcctttcattcttgccatggaatgtaccatctcctgagccacaataatattatggtggatacttc-tacctgg 35198033  T
Q  396 aataaaactagactggtatggagaaataataccatcaagcaacggct 442  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  35198034 aataaaactggactgatatggagaaataataccatcaagcaatggct 35198080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 26619082 - 26619122
Alignment:
Q  393 tggaataaaactagactggtatggagaaataataccatcaa 433  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  26619082 tggaataaaactaaactggtatggagaaataatacgatcaa 26619122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 8e-35; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 100 - 442
Target Start/End: Original strand, 49574765 - 49575110
Alignment:
Q  100 taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc 199  Q
    ||||||| |||||| ||||||| | ||||||||||||| ||  |||| |||||||||| |||||||||||||| |||||||||  ||||  |||||||||    
T  49574765 taaggggagagaggatctccttgacgaattcctctagttggagtgaacgtgtcagttttatccccattccacaaaattttgtaactaggcgaagatatgc 49574864  T
Q  200 aatgatggattgtttgaatgacattagg-gggaatttacactccttcaaatagttctccacaaattcccaattgatgtgatcataatctctcggta--tc 296  Q
    ||| | | ||  ||||||||| |||||| ||||||||||| |||| |||  | ||||||||||| | |||||||||| |||||||| || |   ||  ||    
T  49574865 aatcacgtataatttgaatgagattaggagggaatttacaatcctccaagcaattctccacaaaattccaattgatgcgatcataagctttttctaggtc 49574964  T
Q  297 agttttaattgacaagaacatattgcttcttttcatcttagtcatggagtgaaccattttctgagaaataataata-tatggtgtttacttctttcatgg 395  Q
    | |||| || |||| |||||| ||| | | ||||||  | | |||||| || ||||| | |||||  | ||||||| |||||||  |||||| | | |||    
T  49574965 aattttgatggacatgaacatcttgttgcctttcattctggccatggaatgtaccatctcctgagccacaataatattatggtggatacttc-tacctgg 49575063  T
Q  396 aataaaactagactggtatggagaaataataccatcaagcaacggct 442  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  49575064 aataaaactggactgatatggagaaataataccatcaagcaatggct 49575110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 100 - 442
Target Start/End: Original strand, 8057085 - 8057430
Alignment:
Q  100 taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc 199  Q
    ||||||| |||||| ||||||| | ||||||||||||| ||  |||| |||||||||| |||||||||||||| |||||||||  ||||  |||||||||    
T  8057085 taaggggagagaggatctccttgacgaattcctctagttggagtgaacgtgtcagttttatccccattccacaaaattttgtaactaggcgaagatatgc 8057184  T
Q  200 aatgatggattgtttgaatgacattagg-gggaatttacactccttcaaatagttctccacaaattcccaattgatgtgatcataatctctcggta--tc 296  Q
    ||  | | ||  ||||||||| |||||| ||||||||||| |||| |||  | ||||||||||| | |||||||||| |||||||| || |   ||  ||    
T  8057185 aaacacgtataatttgaatgagattaggagggaatttacaatcctccaagcaattctccacaaaattccaattgatgcgatcataagctttttctaggtc 8057284  T
Q  297 agttttaattgacaagaacatattgcttcttttcatcttagtcatggagtgaaccattttctgagaaataataata-tatggtgtttacttctttcatgg 395  Q
    | |||| || |||| |||||| ||| | | ||||||  | | |||||| || ||||| | |||||  | ||||||| |||||||  |||||| | | |||    
T  8057285 aattttgatggacatgaacatcttgttgcctttcattctggccatggaatgtaccatctcctgagccacaataatattatggtggatacttc-tacctgg 8057383  T
Q  396 aataaaactagactggtatggagaaataataccatcaagcaacggct 442  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  8057384 aataaaactggactgatatggagaaataataccatcaagcaatggct 8057430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 100 - 442
Target Start/End: Original strand, 46021129 - 46021474
Alignment:
Q  100 taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc 199  Q
    ||||||| |||||| ||||||| | ||||||||||||| ||  |||| |||||||||| |||||||||||||| |||||||||  ||||  |||||||||    
T  46021129 taaggggagagaggatctccttgacgaattcctctagttggagtgaacgtgtcagttttatccccattccacaaaattttgtaactaggcgaagatatgc 46021228  T
Q  200 aatgatggattgtttgaatgacattag-ggggaatttacactccttcaaatagttctccacaaattcccaattgatgtgatcataatctctcggta--tc 296  Q
    ||| | | ||  ||||||||| |||||  ||||||||||| |||| |||  | ||||||||||| | |||||||||| |||||||| || |   ||  ||    
T  46021229 aatcacgtataatttgaatgagattagcagggaatttacaatcctccaagcaattctccacaaaattccaattgatgcgatcataagctttttctaggtc 46021328  T
Q  297 agttttaattgacaagaacatattgcttcttttcatcttagtcatggagtgaaccattttctgagaaataataata-tatggtgtttacttctttcatgg 395  Q
    | |||| || |||| |||||| ||| | | ||||||  | | |||||| || ||||| | |||||  | ||||||| |||||||  |||||| | | |||    
T  46021329 aattttgatggacatgaacatcttgttgcctttcattctggccatggaatgtaccatctcctgagccacaataatattatggtggatacttc-tacctgg 46021427  T
Q  396 aataaaactagactggtatggagaaataataccatcaagcaacggct 442  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  46021428 aataaaactggactgatatggagaaataataccatcaagcaatggct 46021474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 5306565 - 5306521
Alignment:
Q  393 tggaataaaactagactggtatggagaaataataccatcaagcaa 437  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  5306565 tggaataaaactagactggtatggagaaataatacgatcaagcaa 5306521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 395 - 437
Target Start/End: Original strand, 50954863 - 50954905
Alignment:
Q  395 gaataaaactagactggtatggagaaataataccatcaagcaa 437  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  50954863 gaataaaactagactggtatggagaaataatacgatcaagcaa 50954905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 393 - 434
Target Start/End: Complemental strand, 23947538 - 23947497
Alignment:
Q  393 tggaataaaactagactggtatggagaaataataccatcaag 434  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  23947538 tggaataaaactagactggtatggagaaataatacgatcaag 23947497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 393 - 442
Target Start/End: Complemental strand, 36027799 - 36027750
Alignment:
Q  393 tggaataaaactagactggtatggagaaataataccatcaagcaacggct 442  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  36027799 tggaataaaactggactgatatggagaaataataccatcaagcaatggct 36027750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 54814606 - 54814655
Alignment:
Q  393 tggaataaaactagactggtatggagaaataataccatcaagcaacggct 442  Q
    ||||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  54814606 tggaataaaactagactggtatggagaaataattctatcaagcaaaggct 54814655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 393 - 442
Target Start/End: Complemental strand, 46426398 - 46426349
Alignment:
Q  393 tggaataaaactagactggtatggagaaataataccatcaagcaacggct 442  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||| ||||    
T  46426398 tggaataaaactagactggtatggaaaaataattctatcaagcaaaggct 46426349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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