View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6020_low_53 (Length: 236)

Name: NF6020_low_53
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6020_low_53
NF6020_low_53
[»] chr3 (11 HSPs)
chr3 (16-236)||(23466465-23466684)
chr3 (137-236)||(23407778-23407874)
chr3 (16-118)||(23407862-23407966)
chr3 (181-230)||(23429820-23429866)
chr3 (138-230)||(23489731-23489818)
chr3 (181-230)||(23390039-23390085)
chr3 (16-57)||(25045316-25045357)
chr3 (16-57)||(32278317-32278358)
chr3 (16-57)||(39439999-39440040)
chr3 (16-57)||(42029424-42029465)
chr3 (156-230)||(23444701-23444771)
[»] chr5 (2 HSPs)
chr5 (16-57)||(4943476-4943517)
chr5 (16-57)||(11617183-11617224)
[»] chr1 (2 HSPs)
chr1 (18-57)||(7741059-7741098)
chr1 (16-57)||(48046406-48046447)
[»] chr4 (2 HSPs)
chr4 (16-62)||(35033956-35034002)
chr4 (21-57)||(3121182-3121218)
[»] scaffold0227 (1 HSPs)
scaffold0227 (13-54)||(327-368)
[»] scaffold0022 (2 HSPs)
scaffold0022 (16-57)||(44258-44299)
scaffold0022 (16-57)||(77979-78020)
[»] chr2 (3 HSPs)
chr2 (16-57)||(6476770-6476811)
chr2 (16-57)||(28218967-28219008)
chr2 (21-57)||(10354209-10354245)
[»] chr7 (1 HSPs)
chr7 (16-56)||(19625367-19625407)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 23466684 - 23466465
Alignment:
Q  16 attctattccattccaccactctctaccaatccaaacatagctttaaagttggccattggtggggttgggatgaggtcggaagagggccatctcaattcc 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23466684 attcaattccattccaccactctctaccaatccaaacatagctttaaagttggccattggtggggttgggatgagatcggaagagggccatctcaattcc 23466585  T
Q  116 ttgnnnnnnnnnnnggttacgtctcaattccttgttagtaaaaaaggatataaataagtttttaaataaataatttatcaaagcaggccgtcttcattaa 215  Q
    |||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23466584 ttgtttttttttt-ggttacgtctcaattccttgttagtaaaaaaggatataaataagtttttaaataaataatttatcaaagcaggccgtcttcattaa 23466486  T
Q  216 tattttctaaattggtccaac 236  Q
    ||||||||||||||| |||||    
T  23466485 tattttctaaattggaccaac 23466465  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 23407874 - 23407778
Alignment:
Q  137 tctcaattccttgttagtaaaaaaggatataaataagtttttaaataaataatttatcaaagcaggccgtcttcattaatattttctaaattggtccaac 236  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||    
T  23407874 tctcaattccttgttaggaaaaaaggatataaataagtttttaaataaataatttatcaaagcag---gtcttcattaatattttctaaattggaccaac 23407778  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 23407966 - 23407862
Alignment:
Q  16 attctattccattccaccactctctaccaatccaaacatagctttaaagttggccattggtggggtt--gggatgaggtcggaagagggccatctcaatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||  |||||||||||  ||| ||||||||||||||    
T  23407966 attctattccattccaccactctctaccaatccaaacatagctttaaggttggccatgggtggagttgggggatgaggtcccaagggggccatctcaatt 23407867  T
Q  114 ccttg 118  Q
    |||||    
T  23407866 ccttg 23407862  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 23429866 - 23429820
Alignment:
Q  181 ataaataatttatcaaagcaggccgtcttcattaatattttctaaattgg 230  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||    
T  23429866 ataaataatttatcaaagcagg---tcttcattaatattttctaaattgg 23429820  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 23489818 - 23489731
Alignment:
Q  138 ctcaattccttgttagtaaaaaaggatataaataagtttttaaataaataatttatcaaagcaggccgtcttcattaatattttctaaattgg 230  Q
    |||||||||||||  ||||||| | |||||||| ||||||| | ||||||||||||||||||| |   | |||||||||||||||||||||||    
T  23489818 ctcaattccttgtgtgtaaaaa-gtatataaatcagtttttga-taaataatttatcaaagcatg---tattcattaatattttctaaattgg 23489731  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 23390085 - 23390039
Alignment:
Q  181 ataaataatttatcaaagcaggccgtcttcattaatattttctaaattgg 230  Q
    ||||||||||||||||||||||   | |||||||||||||||||||||||    
T  23390085 ataaataatttatcaaagcagg---tattcattaatattttctaaattgg 23390039  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 25045357 - 25045316
Alignment:
Q  16 attctattccattccaccactctctaccaatccaaacatagc 57  Q
    |||| ||||||||||||||||||| | |||||||||||||||    
T  25045357 attccattccattccaccactctccatcaatccaaacatagc 25045316  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 32278358 - 32278317
Alignment:
Q  16 attctattccattccaccactctctaccaatccaaacatagc 57  Q
    |||| ||||||||||||||||||| | |||||||||||||||    
T  32278358 attccattccattccaccactctccatcaatccaaacatagc 32278317  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 39439999 - 39440040
Alignment:
Q  16 attctattccattccaccactctctaccaatccaaacatagc 57  Q
    |||| ||||||||||||||||||| | |||||||||||||||    
T  39439999 attccattccattccaccactctccatcaatccaaacatagc 39440040  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 42029424 - 42029465
Alignment:
Q  16 attctattccattccaccactctctaccaatccaaacatagc 57  Q
    |||| ||||||||||||||||| | |||||||||||||||||    
T  42029424 attccattccattccaccactcaccaccaatccaaacatagc 42029465  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 23444771 - 23444701
Alignment:
Q  156 aaaaaggatataaataagtttttaaataaataatttatcaaagcaggccgtcttcattaatattttctaaattgg 230  Q
    |||||| |||||||| ||||||| | |||||||||||||||||||    || |||||||||||||||| ||||||    
T  23444771 aaaaagtatataaatcagtttttga-taaataatttatcaaagca---tgtattcattaatattttctcaattgg 23444701  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 4943517 - 4943476
Alignment:
Q  16 attctattccattccaccactctctaccaatccaaacatagc 57  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  4943517 attctattccattccaccactcaccaccaatccaaacatagc 4943476  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 11617224 - 11617183
Alignment:
Q  16 attctattccattccaccactctctaccaatccaaacatagc 57  Q
    |||| ||||||||||||||||||| | |||||||||||||||    
T  11617224 attccattccattccaccactctccatcaatccaaacatagc 11617183  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 7741098 - 7741059
Alignment:
Q  18 tctattccattccaccactctctaccaatccaaacatagc 57  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  7741098 tctattccattccaccactctccatcaatccaaacatagc 7741059  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 48046447 - 48046406
Alignment:
Q  16 attctattccattccaccactctctaccaatccaaacatagc 57  Q
    |||| ||||||||||||||||||| | |||||||||||||||    
T  48046447 attccattccattccaccactctccatcaatccaaacatagc 48046406  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 35033956 - 35034002
Alignment:
Q  16 attctattccattccaccactctctaccaatccaaacatagctttaa 62  Q
    |||| ||||||||||||||||||| | ||||||||||||||| ||||    
T  35033956 attccattccattccaccactctccatcaatccaaacatagccttaa 35034002  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 3121218 - 3121182
Alignment:
Q  21 attccattccaccactctctaccaatccaaacatagc 57  Q
    ||||||||||||||||||| | |||||||||||||||    
T  3121218 attccattccaccactctccatcaatccaaacatagc 3121182  T

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Target: scaffold0227 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 327 - 368
Alignment:
Q  13 tcaattctattccattccaccactctctaccaatccaaacat 54  Q
    ||||||| ||||||||||||||||| | ||||||||||||||    
T  327 tcaattccattccattccaccactcaccaccaatccaaacat 368  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 44258 - 44299
Alignment:
Q  16 attctattccattccaccactctctaccaatccaaacatagc 57  Q
    |||| ||||||||||||||||||| | |||||||||||||||    
T  44258 attccattccattccaccactctccatcaatccaaacatagc 44299  T

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Target: scaffold0022; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 77979 - 78020
Alignment:
Q  16 attctattccattccaccactctctaccaatccaaacatagc 57  Q
    |||| ||||||||||||||||||| | |||||||||||||||    
T  77979 attccattccattccaccactctccatcaatccaaacatagc 78020  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 6476811 - 6476770
Alignment:
Q  16 attctattccattccaccactctctaccaatccaaacatagc 57  Q
    |||| ||||||||||||||||||| | |||||||||||||||    
T  6476811 attccattccattccaccactctccatcaatccaaacatagc 6476770  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 28219008 - 28218967
Alignment:
Q  16 attctattccattccaccactctctaccaatccaaacatagc 57  Q
    |||| ||||||||||||||||| | |||||||||||||||||    
T  28219008 attccattccattccaccactcaccaccaatccaaacatagc 28218967  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 10354245 - 10354209
Alignment:
Q  21 attccattccaccactctctaccaatccaaacatagc 57  Q
    ||||||||||||||||||| | |||||||||||||||    
T  10354245 attccattccaccactctccatcaatccaaacatagc 10354209  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 19625407 - 19625367
Alignment:
Q  16 attctattccattccaccactctctaccaatccaaacatag 56  Q
    |||| ||||||||||||||||||| | ||||||||||||||    
T  19625407 attccattccattccaccactctccatcaatccaaacatag 19625367  T

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