View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_low_6 (Length: 601)
Name: NF6020_low_6
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_6 |
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| [»] scaffold0603 (1 HSPs) |
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| [»] scaffold1301 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 213 - 591
Target Start/End: Original strand, 4184331 - 4184719
Alignment:
| Q |
213 |
actctgctcactctcaacttctgtgaaggtgctgttagacaagactgtttctagtga---cttcatcggcaagttccaggccacgaagcttgacgtttcg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4184331 |
actctgctcactctcaacttctgtgaaggtgctgttagacaagattgtttctagtgagtacttcatcggcaagttccaggccacgaagcttgacgtttca |
4184430 |
T |
|
| Q |
310 |
ct---cttggaaaagcttaagacaatacttatggttcttcatgaagctgtggagacacttactttaaggctttgtcgacaactttggctgaatatgctgg |
406 |
Q |
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| T |
4184431 |
ctactcttggaaaagcttaagacaatacttatggttcttcatgaagctgtggagacacttactttaaggctttgtcgacaactttggctgaatatgctgg |
4184530 |
T |
|
| Q |
407 |
aatat----gttgtatttgaactctacaattgctcttgctccatagattattttaacaatatccaactgttgtaacaagatggaccaagcgttacgaaca |
502 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4184531 |
aatatatatgttgtatttgaactctacaattgctcttgctccaaagattattttaacaatatccaactgttgtaacaagatggaccaagcgttacgaaca |
4184630 |
T |
|
| Q |
503 |
tgcttatgaactttaaggaaaatggttattaaagtaatacttaaatgacttaagacaataatttgaatgaacaagagatgttgatgatg |
591 |
Q |
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| T |
4184631 |
tgcttatgaactttaaggaaaatggttattaaagtaatacttaaatgacttaagacaataatttgaatgaacaagagatgttgatgatg |
4184719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 191 - 335
Target Start/End: Original strand, 5964916 - 5965060
Alignment:
| Q |
191 |
tggttgataaatcttttctacaactctgctcactctcaacttctgtgaaggtgctgttagacaagactgtttctagtgacttcatcggcaagttccaggc |
290 |
Q |
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|||||||| ||||| | |||||||| |||||||||| |||||||||||||| ||||| |||||| |||||||||| | ||| ||| ||| ||||| |
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| T |
5964916 |
tggttgatgaatctcctatacaactcgtctcactctcagcttctgtgaaggtgttgttaaacaagattgtttctagtcagttcgtcgacaacttccacag |
5965015 |
T |
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| Q |
291 |
cacgaagcttgacgtttcgctcttggaaaagcttaagacaatact |
335 |
Q |
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||| || ||||| ||||| |||||||||||||||||||||||||| |
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| T |
5965016 |
cactaaacttgatgtttcactcttggaaaagcttaagacaatact |
5965060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 5964819 - 5964882
Alignment:
| Q |
88 |
ttgcaaaaattaattgaaaaattagaaggcttgagttcgggagaacatgtaggtgaattaggtg |
151 |
Q |
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|||| |||||||||||||||||| ||||||| |||||| |||||||| ||||| ||||||||| |
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| T |
5964819 |
ttgcgaaaattaattgaaaaatttgaaggctggagttctggagaacagctaggtaaattaggtg |
5964882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 5965344 - 5965376
Alignment:
| Q |
79 |
aattctaaattgcaaaaattaattgaaaaatta |
111 |
Q |
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| T |
5965344 |
aattctaaattgcaaaaattaattgaaagatta |
5965376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0603 (Bit Score: 143; Significance: 8e-75; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 21 - 380
Target Start/End: Complemental strand, 5898 - 5530
Alignment:
| Q |
21 |
tgaaatcaagactaaggcgttgcgctgcaaagtagagtctgagttcaggagggtcattaattctaaattgcaaaaattaattgaaaaattagaag---gc |
117 |
Q |
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||||||||||||| | |||||||||||||||||||| |||||||||| ||||||| ||||||||||||| | |||||||||||| |||||||| | |
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| T |
5898 |
tgaaatcaagactgaagcgttgcgctgcaaagtagacggtgagttcaggtgggtcatgaattctaaattgcgagaattaattgaaagattagaagaagga |
5799 |
T |
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| Q |
118 |
ttgagttcgggagaacatgtaggtgaattaggtgttttcaaaagtgattggaatcaaattcctcctaaa---gatttggttgataaatcttttctacaac |
214 |
Q |
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||||||||||||||||| || || ||||| ||||||||||||||||||| || || |||| | || | ||||||||||||||||| ||||||| |
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| T |
5798 |
ttgagttcgggagaacaggttggcaaattaaatgttttcaaaagtgattggtatggaactcctacaaattctgttttggttgataaatcttctctacaat |
5699 |
T |
|
| Q |
215 |
tctgctcactctcaacttctgtgaaggtgctgttagacaagactgtttctagtgacttcatcggcaagttccaggccacgaagcttgacgtttcgctctt |
314 |
Q |
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||| ||||||||||| ||||||| |||||||| |||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| |
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| T |
5698 |
tctactcactctcaatttctgtgtcactgctgttaaacaagattgtttctagtgacttcatcggcaacttccaggccatgaagcttgacgtttcactctt |
5599 |
T |
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| Q |
315 |
ggaaaagcttaagacaatacttatg---gttcttcatgaagctgtggagacacttactttaaggctttg |
380 |
Q |
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|||||||||||||||||||||| || ||||||| ||| ||||| || | ||||||||| ||||||| |
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| T |
5598 |
ggaaaagcttaagacaatacttgtgcccgttcttcttgatgctgtagacatacttactttcgggctttg |
5530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 479 - 591
Target Start/End: Complemental strand, 29251153 - 29251041
Alignment:
| Q |
479 |
aagatggaccaagcgttacgaacatgcttatgaactttaaggaaaatggttattaaagtaatacttaaatgacttaagacaataatttgaatgaacaaga |
578 |
Q |
| |
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|||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| |
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| T |
29251153 |
aagatggaccaagctttatgaagatgcttatgaacttaaaggaaaatggttattagacgaatacttaaatgacttaagacaataatttggatgaacaaga |
29251054 |
T |
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| Q |
579 |
gatgttgatgatg |
591 |
Q |
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||||||||||||| |
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| T |
29251053 |
gatgttgatgatg |
29251041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 5988018 - 5988056
Alignment:
| Q |
76 |
attaattctaaattgcaaaaattaattgaaaaattagaa |
114 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |
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| T |
5988018 |
attaattctaaattgcaaaaattaattgaaagattagaa |
5988056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1301 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1301
Description:
Target: scaffold1301; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 566 - 514
Alignment:
| Q |
223 |
ctctcaacttctgtgaaggtgctgttagacaagactgtttctagtgacttcat |
275 |
Q |
| |
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|||||||||| |||||| ||| ||||| |||||| |||||||||||| ||||| |
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| T |
566 |
ctctcaacttgtgtgaaagtgttgttaaacaagattgtttctagtgagttcat |
514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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