View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_low_7 (Length: 552)
Name: NF6020_low_7
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 22043828 - 22043423
Alignment:
| Q |
16 |
atttttgttgtctataaaactaactctactttatttatcccttctaatagacaaatgttgagattggtccagattttatacagaaatattatgctcggtt |
115 |
Q |
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| T |
22043828 |
atttttattgtctataaaactaactctactttatttatcccttctaatagacaaatgctgagattgatccagattttatacagaaatattatgctcggtt |
22043729 |
T |
|
| Q |
116 |
aggaaacaagtggtgtgtatggaatgatgaaggattccatactgtcagattcaaccaagactaccattatcatctgttaacaaaaggatggaacaaaata |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22043728 |
aggaaacaagtggtgtgtatggaatgatgaaggattccatactgtcaaattcaaccaagactaccattatcctctgttaacaaaaggatggaacaaaata |
22043629 |
T |
|
| Q |
216 |
aaattgcattatcaattttctgataatgttgatattgtcttatcttactatggaagtaannnnnnngcagttaaatctttcaatactctaaactccacat |
315 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
22043628 |
aaattgcattatcaatttcctgataatgttgatgttgtcttatcttactatggaagtagtttttttgcacttaaatctttcaatactctaaactccacat |
22043529 |
T |
|
| Q |
316 |
cacaaatcccatattttcatagtcgaaatctagatcctgctgtagcaatttactttgacgtcactctaactcaaaatatcatggacgaaatgtctttagt |
415 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22043528 |
cacaaatcccagattttcatagtcgaaatctagatcctgctgtagcaatttcctttgacgtcactctaactcaaaatatcatggacgaaatgtctttagt |
22043429 |
T |
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| Q |
416 |
tacgta |
421 |
Q |
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|||||| |
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| T |
22043428 |
tacgta |
22043423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Complemental strand, 22043343 - 22043310
Alignment:
| Q |
503 |
actataccagaagatttcgccaactatatcaatc |
536 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
22043343 |
actataccagaagattttgccaactatatcaatc |
22043310 |
T |
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