View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6020_low_9 (Length: 504)
Name: NF6020_low_9
Description: NF6020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6020_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 30369065 - 30369124
Alignment:
| Q |
17 |
aaggactaatagtatgtgttgatgtttagttattagttggtgttgtacaacataacattc |
76 |
Q |
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| T |
30369065 |
aaggactaatagtatgtgttgatgtttagttattagttggtgttgtacaacataacattc |
30369124 |
T |
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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 31382428 - 31382501
Alignment:
| Q |
220 |
atttgatggaagcatttgatatatgtat-ttgtttcctttagcttatttgtaattgtgattccagtgacttgca |
292 |
Q |
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| T |
31382428 |
atttgatagaagcatttgatatatgtatattatttcctttcgcctatttgtaattgtgattccagtgacttgca |
31382501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 31406296 - 31406355
Alignment:
| Q |
232 |
catttgatatatgtatttgtttcctttagcttatttgtaattgtgattccagtgacttgca |
292 |
Q |
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| T |
31406296 |
catttgatatatgtattactt-catttagcttatctgtaattgtgattccagtgacttgca |
31406355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 31375478 - 31375443
Alignment:
| Q |
38 |
atgtttagttattagttggtgttgtacaacataaca |
73 |
Q |
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| T |
31375478 |
atgtttggttattagttggtgttgtacaacataaca |
31375443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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