View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_10 (Length: 520)
Name: NF6021_high_10
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 15 - 355
Target Start/End: Complemental strand, 8460457 - 8460118
Alignment:
| Q |
15 |
agaacctgtggtgcgacaaaatgaatatttaaccactgcgaaacagaaacccacagattgcgaaatgtgtcgcaatataaaaataaatgtgtagtagtct |
114 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8460457 |
agaacctctggtgcgacaaaatgaatatttaaccactgcgaaacagaaacccacagattgcgaaatgtgtcgcaatttaaaaataaatgtgtagtagtct |
8460358 |
T |
|
| Q |
115 |
cttgtaaaccccatcctctaacattaattagttgattgaatgtctactgtgtaattgatcttactacagttattaattattacttcaatgagtttgtctt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8460357 |
tttgtaaaccccatcctctaacattaattagttgattgaatgtctattgtgtaattgatcttactacagttattaattattacttgaatgagtttgtctt |
8460258 |
T |
|
| Q |
215 |
tctcttgataatagcaatttgtagaaggtaactaatgtcgttacacnnnnnnnnncctcaccnnnnnnngtaagatagtaaagcctaagattaattccct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
8460257 |
tctcttgataatagcaatttgtagaaggtaactaatgtcgttacac-ttttttttcctcaccaaaaaaagtaagatagtaaagcctaagattaattccct |
8460159 |
T |
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| Q |
315 |
tgtatgtaaaagaataacttaaaagaatggattagttttta |
355 |
Q |
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| T |
8460158 |
agtatgtaaaagaataacttaaaagaatggattagttttta |
8460118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 391 - 502
Target Start/End: Complemental strand, 8460079 - 8459968
Alignment:
| Q |
391 |
ctcctaattgagcaaatttctaggaagtaaatagttttcactatgttccttggcaaaaatggctttgaactaattggtacattcatttccttctctaagt |
490 |
Q |
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| T |
8460079 |
ctcctaattgagcaaatttctaggaaataaatagttttcactatgttccttggcaaaaatggctttgaactaattggtacattcatttccttctctaagt |
8459980 |
T |
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| Q |
491 |
gtatgttgaaaa |
502 |
Q |
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| T |
8459979 |
gtatgttgaaaa |
8459968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 8466577 - 8466479
Alignment:
| Q |
162 |
tgtgtaattgatcttactacagttattaattattacttcaatgagtttgtctttctcttgataatagcaatttgtagaaggtaactaatgtcgttacac |
260 |
Q |
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| T |
8466577 |
tgtgtaattgatcttactagagttattaattattactgcaatgagtttgtctttctcctgataatagcaatttgtagaaggtaactaatgtcgttacac |
8466479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 8466432 - 8466380
Alignment:
| Q |
302 |
agattaattcccttgtatgtaaaagaataacttaaaagaatggattagttttta |
355 |
Q |
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| T |
8466432 |
agattaattcctttgtgtgtaaaagaataactt-aaagaatggattagttttta |
8466380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 452
Target Start/End: Complemental strand, 8466370 - 8466306
Alignment:
| Q |
391 |
ctcctaattgagcaaatttctaggaagta---aatagttttcactatgttccttggcaaaaatgg |
452 |
Q |
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|||||||||||| ||||||||||||| | || |||||||||||||||||||||||||||||| |
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| T |
8466370 |
ctcctaattgagaaaatttctaggaaacataaaacagttttcactatgttccttggcaaaaatgg |
8466306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 16423340 - 16423462
Alignment:
| Q |
15 |
agaacctgtggtgcgacaaaatgaatatttaaccactgcgaaacagaaacccacagattgcgaaatgtgtcgcaatataaaaataaatgtgtagtagtct |
114 |
Q |
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||||||| | ||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| | ||| |
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| T |
16423340 |
agaacctctagtgcgacaaaatgaatatttaaccattgtgaaacagaaacccacagattgagaaatgtgtcacaatttaaaaataaatgtgtagcattct |
16423439 |
T |
|
| Q |
115 |
cttgtaaaccccatcctctaaca |
137 |
Q |
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|||||||||| || |||| |||| |
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| T |
16423440 |
cttgtaaaccgcaccctccaaca |
16423462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 4637288 - 4637229
Alignment:
| Q |
44 |
taaccactgcgaaacagaaacccacagattgcgaaatgtgtcgcaatataaaaataaatg |
103 |
Q |
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|||||||||||||||| ||||||||||||||| ||| ||| |||||| |||||||||||| |
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| T |
4637288 |
taaccactgcgaaacaaaaacccacagattgccaaaagtggcgcaatgtaaaaataaatg |
4637229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 28407824 - 28407776
Alignment:
| Q |
202 |
atgagtttgtctttctcttgataatagcaatttgtagaaggtaactaat |
250 |
Q |
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|||||||||| ||| |||||||||||| ||||||||||||||||||||| |
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| T |
28407824 |
atgagtttgtgtttatcttgataatagtaatttgtagaaggtaactaat |
28407776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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