View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_101 (Length: 238)
Name: NF6021_high_101
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_101 |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 34205336 - 34205225
Alignment:
| Q |
1 |
ttgaagtatatcaactacagcaattgtttttctttgtatnnnnnnnctacagcaannnnnnnnnggataatcccaacttgaggtgatcaactacaccttt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34205336 |
ttgaagtatatcaactacagcaattgtttttctttgtataaaaaaactacagcaatttttttttggataatcccaacttgaggtgatcaactacaccttt |
34205237 |
T |
|
| Q |
101 |
ccgtttttatcg |
112 |
Q |
| |
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|||||||||||| |
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| T |
34205236 |
ccgtttttatcg |
34205225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 34167607 - 34167495
Alignment:
| Q |
1 |
ttgaagtatatcaactacagcaattgtttttctttgtatnnnnnnnctacagcaannnnnnnnn-ggataatcccaacttgaggtgatcaactacacctt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34167607 |
ttgaagtatatcaactacagcaattgtttttctttgtataaaaaaactacagcaattttttttttggataatcccaacttgaggtgatcaactacacctt |
34167508 |
T |
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| Q |
100 |
tccgtttttatcg |
112 |
Q |
| |
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||||||||||||| |
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| T |
34167507 |
tccgtttttatcg |
34167495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 27928 - 27818
Alignment:
| Q |
1 |
ttgaagtatatcaactacagcaattgtttttctttgtatnnnnnnnctacagcaannnnnnnnnggataatcccaacttgaggtgatcaactacaccttt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27928 |
ttgaagtatatcaactacagcaattgtttttctttgtataaaaaaactacagcaatttttttt-ggataatcccaacttgaggtgatcaactacaccttt |
27830 |
T |
|
| Q |
101 |
ccgtttttatcg |
112 |
Q |
| |
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|||||||||||| |
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|
| T |
27829 |
ccgtttttatcg |
27818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 34430 - 34318
Alignment:
| Q |
1 |
ttgaagtatatcaactacagcaattgtttttctttgtatnnnnnnnctacagcaannnnnnnnn-ggataatcccaacttgaggtgatcaactacacctt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34430 |
ttgaagtatatcaactacagcaattgtttttctttgtataaaaaaactacagcaattttttttttggataatcccaacttgaggtgatcaactacacctt |
34331 |
T |
|
| Q |
100 |
tccgtttttatcg |
112 |
Q |
| |
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||||||||||||| |
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|
| T |
34330 |
tccgtttttatcg |
34318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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