View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_106 (Length: 231)
Name: NF6021_high_106
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_106 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 43949130 - 43949330
Alignment:
| Q |
16 |
caatatcatgcaagtataagtgtacaaaagtctgtctatacagttaaaattcacgagactc-aagttattttgaatacatttctccatggtagtaagaaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43949130 |
caatatcatgcaagtataagtgtacaaaagtctgtctatacagttaaaattcacgagactcgaagttattttgaatacatttctccatggtagtaagaaa |
43949229 |
T |
|
| Q |
115 |
gaaaaaagtataaatcgataaatagt---ataaggttaaagtattactaggggtaacgattacataggttgtaaccggagataagtgagctaatagcaaa |
211 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43949230 |
gaaaaaagtataaatcgataaatagtagtataaggttaaagtattactaggggtaacgattacataggttgtaaccggagataagtgagctaatagcaaa |
43949329 |
T |
|
| Q |
212 |
g |
212 |
Q |
| |
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| |
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| T |
43949330 |
g |
43949330 |
T |
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