View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_high_107 (Length: 230)

Name: NF6021_high_107

Description: NF6021

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6021_high_107

[»] chr4 (1 HSPs)

[»] chr6 (1 HSPs)

Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 183; E-Value: 4e-99

Query Start/End: Original strand, 21 - 215

Target Start/End: Original strand, 4669830 - 4670024

Alignment:

Q	21	gatctgatgccctatttgttggttgatttgctggattttttaacatattcaatcttttcctggccggttcatcatccataccatcttctggtacccctat	120	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	4669830	gatctgatgccctatttgttggttgatttgctggattttttaacatattcaatcttttcctggctggttcatcatccataccatcttttggtacccctat	4669929	T

Q	121	aactttttgtttctcttttgaaggagctcattctttcatcacatggttgtagcatccccaatgcatacaaattatgtgtagacccaccatgtatt	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4669930	aactttttgtttctcttttgaaggagctcattctttcatcacatggttgtagcatccccaatgcatacaaattatatgtagacccaccatgtatt	4670024	T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 130 - 205

Target Start/End: Original strand, 10872953 - 10873036

Alignment:

Q	130	tttctcttttgaaggagctcattctttcatcacatggttg--------tagcatccccaatgcatacaaattatgtgtagaccc	205	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10872953	tttctcttttgaaggagcacactctttcatcacatggtcgtagactcatagcatccacaatacatacaaattatgtgtagaccc	10873036	T

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