View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_108 (Length: 229)
Name: NF6021_high_108
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_108 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 53515400 - 53515172
Alignment:
| Q |
1 |
gttgagagaaagaccggcttattagtattactgacggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgt |
100 |
Q |
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| T |
53515400 |
gttgagagaaagaccggcttattagtattactgacggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgt |
53515301 |
T |
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| Q |
101 |
ataatcttttaagtcttgtaattgttgcctccggaatgcatttcagtttgacggaaaggaaggatcaatggactgaaattctgtcatctgttccaagagc |
200 |
Q |
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| T |
53515300 |
ataatcttttaagtcttgtaattgttgcctccggaatgcatttcagtttgacggaaaggaaggatcaatggactgaaattctgtcatctgttccaagagc |
53515201 |
T |
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| Q |
201 |
ttccatgtatcacaattttctggtctgtt |
229 |
Q |
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| T |
53515200 |
ttccatgtatcacaattttctggtctgtt |
53515172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 39 - 225
Target Start/End: Complemental strand, 53526199 - 53526013
Alignment:
| Q |
39 |
aaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatg |
138 |
Q |
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| T |
53526199 |
aaggaaggatgaaaacttcgtagagtgagtgatattctatttgattttgatttgaaatatgtttattctttcatgttttgtgattgttgcccccggaatt |
53526100 |
T |
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| Q |
139 |
catttcagtttgacggaaaggaaggatcaatggactgaaattctgtcatctgttccaagagcttccatgtatcacaattttctggtc |
225 |
Q |
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| T |
53526099 |
tgtttcagtttgtcggaaaggaaggatcagtggactgaagttctttcatcggagccaagagcttccatgtatcacaattttctggtc |
53526013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 53526670 - 53526541
Alignment:
| Q |
32 |
tgacggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctc |
131 |
Q |
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|||||||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| || ||||| | || |||| ||||||||||| |
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| T |
53526670 |
tgacggaacggaaggatgaaaacttcatagagtgagtggtattctgattgattttgatttgaaatgtgtttattctttcatgttttgtgattgttgcctc |
53526571 |
T |
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| Q |
132 |
cggaatgcatttcagtttgacggaaaggaa |
161 |
Q |
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| T |
53526570 |
tggaatttgtttcagtttgacggaaaggaa |
53526541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 161
Target Start/End: Complemental strand, 53526433 - 53526306
Alignment:
| Q |
34 |
acggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccg |
133 |
Q |
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| T |
53526433 |
acggaaaggaaggatgaaaactacatagagtgagtggtattttgtttgattttgatttgaaatgtgtttaatctttcatgttttttgattgttgcctctg |
53526334 |
T |
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| Q |
134 |
gaatgcatttcagtttgacggaaaggaa |
161 |
Q |
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| T |
53526333 |
gaatctgtttcagtttgacggaaaggaa |
53526306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 53526553 - 53526419
Alignment:
| Q |
32 |
tgacggaaaggaaggatgaaaacatcataaagtgagtggt-attctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcct |
130 |
Q |
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| T |
53526553 |
tgacggaaaggaatgataaaaacttcatagagtgagtggttattctatttgattttgatttgaaatgtgtttaatctttcgtgttttgtgactgctgcct |
53526454 |
T |
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| Q |
131 |
ccggaatgcatttcagtttgacggaaaggaaggat |
165 |
Q |
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| T |
53526453 |
ctggaattcatttcagtttaacggaaaggaaggat |
53526419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 53526778 - 53526654
Alignment:
| Q |
41 |
ggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatgca |
140 |
Q |
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| T |
53526778 |
ggaaggataaaaacttcatagagtgagtggtattctgtttgattttgatttcaaatgtgtttaatctttcatgatgtgtgattgctgcccccgaaattcg |
53526679 |
T |
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| Q |
141 |
tttcagtttgacggaaaggaaggat |
165 |
Q |
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| T |
53526678 |
tttcagtttgacggaacggaaggat |
53526654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 53526318 - 53526240
Alignment:
| Q |
32 |
tgacggaaaggaaggatgaaaacatcataaagtgagtggt-attctgtttgattttgatttgaaatgtgtataatcttt |
109 |
Q |
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| T |
53526318 |
tgacggaaaggaatgctaaaaacttcatagagtgagtggttattctgtttgattttgatttgaaatgtgtttaatcttt |
53526240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 53550245 - 53550092
Alignment:
| Q |
71 |
tattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatgcatttcagtttgacggaaaggaaggatcaatg |
170 |
Q |
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| T |
53550245 |
tattctgtttgattctgatttggaatgtgtttaatttttcatgttttgtgactgctgcttctggaattggtttcagtctggcggaaaagaaggagcagtg |
53550146 |
T |
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| Q |
171 |
gactgaaattctgtcatctgttccaagagcttccatgtatcacaattttctggt |
224 |
Q |
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| T |
53550145 |
gactgaaattctttcatgggagccaagagctttcgtctatcacaattttttggt |
53550092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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