View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_112 (Length: 225)
Name: NF6021_high_112
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_112 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 14782159 - 14782342
Alignment:
| Q |
19 |
atccccacatacacataacagttgaaacagctttcaaaccaccaaatgcatctctataaactataacaccacccaacacattcatagacaacaatgctgt |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14782159 |
atccccacatacacaaaacagttgaaacagctttcaaaccaccaaatgcatctctataaactataacaccacccaacacattcatagacaacaaagctgt |
14782258 |
T |
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| Q |
119 |
catgcaaatcccaccagttaatgaagatgtcaaaaacaccatcccagcagtccccataaaacaaaactgccacgtcacgacatt |
202 |
Q |
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| T |
14782259 |
catgcaaatcccaccagttaatgaagatgtcaaaaacaccatcccagcagtccccataaaacaaaactgccacgtcacgacatt |
14782342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 14774282 - 14774465
Alignment:
| Q |
19 |
atccccacatacacataacagttgaaacagctttcaaaccaccaaatgcatctctataaactataacaccacccaacacattcatagacaacaatgctgt |
118 |
Q |
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|||||||||| |||| ||||||||||||||| || | ||||||||||||||||||| | || | |||||| ||||||||||||||||||||||| ||||| |
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| T |
14774282 |
atccccacatgcacaaaacagttgaaacagccttaacaccaccaaatgcatctctaaacaccaaaacacctcccaacacattcatagacaacaaagctgt |
14774381 |
T |
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| Q |
119 |
catgcaaatcccaccagttaatgaagatgtcaaaaacaccatcccagcagtccccataaaacaaaactgccacgtcacgacatt |
202 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |
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| T |
14774382 |
catacaaatcccaccagttaatgaagatgtcaaaaacaccattccagcagttcccataaaacaaaactgccacgtcaccacatt |
14774465 |
T |
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