View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_high_114 (Length: 221)

Name: NF6021_high_114
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_high_114
NF6021_high_114
[»] chr7 (13 HSPs)
chr7 (17-137)||(2330767-2330887)
chr7 (17-137)||(2338623-2338743)
chr7 (17-137)||(1605221-1605341)
chr7 (17-137)||(1556604-1556724)
chr7 (17-113)||(1597247-1597343)
chr7 (17-136)||(1540560-1540679)
chr7 (17-137)||(1106834-1106954)
chr7 (17-129)||(2322153-2322265)
chr7 (17-137)||(3954356-3954476)
chr7 (17-123)||(1089494-1089600)
chr7 (54-137)||(1549784-1549867)
chr7 (66-123)||(1563874-1563931)
chr7 (73-111)||(2326499-2326537)
[»] scaffold0491 (1 HSPs)
scaffold0491 (17-137)||(5211-5331)
[»] chr8 (3 HSPs)
chr8 (17-137)||(18748370-18748490)
chr8 (17-116)||(18738460-18738559)
chr8 (17-116)||(18743424-18743523)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 2330767 - 2330887
Alignment:
Q  17 atgaaaagtgtgtcacagagttttgtccgagagcttgcaccattaaacattccgttgagtgaaatttcagtgcagcaacttatgagtcaagaactcaaag 116  Q
    |||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  2330767 atgaaaagtgtgtcacagagttttgtcatagagcttgcaccactaaacattccgttgagtgaaatttcagtgcagcaactcatgagtcatgaactcaaag 2330866  T
Q  117 aattattgcatattgtgaacc 137  Q
     ||||||||||||||||||||    
T  2330867 cattattgcatattgtgaacc 2330887  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 2338623 - 2338743
Alignment:
Q  17 atgaaaagtgtgtcacagagttttgtccgagagcttgcaccattaaacattccgttgagtgaaatttcagtgcagcaacttatgagtcaagaactcaaag 116  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||| ||| |||| |||||||||||||||||||||| |||||||||||| ||||||    
T  2338623 atgaaaagtgtgtcacagagttttgtcccagagattgcaccattaaactttctgttgggtgaaatttcagtgcagcaactcatgagtcaagaattcaaag 2338722  T
Q  117 aattattgcatattgtgaacc 137  Q
     |||||| |||||||||||||    
T  2338723 cattattccatattgtgaacc 2338743  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 1605221 - 1605341
Alignment:
Q  17 atgaaaagtgtgtcacagagttttgtccgagagcttgcaccattaaacattccgttgagtgaaatttcagtgcagcaacttatgagtcaagaactcaaag 116  Q
    |||||| |||||||||| |||||||||   |||||  ||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||||| ||||    
T  1605221 atgaaacgtgtgtcacaaagttttgtcacggagctcacaccattaagcattcctttgagtgaaatttcagtgcaacaactcatgagtcaagaactgaaag 1605320  T
Q  117 aattattgcatattgtgaacc 137  Q
     ||||||  |||||| |||||    
T  1605321 gattattttatattgggaacc 1605341  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 1556724 - 1556604
Alignment:
Q  17 atgaaaagtgtgtcacagagttttgtccgagagcttgcaccattaaacattccgttgagtgaaatttcagtgcagcaacttatgagtcaagaactcaaag 116  Q
    |||||| |||||||||| |||||||||   || ||| ||||||||| |||||| |||||||||||||||||||| ||||| |||||| |||||||||| |    
T  1556724 atgaaacgtgtgtcacaaagttttgtcactgaacttacaccattaagcattcctttgagtgaaatttcagtgcaacaactaatgagtgaagaactcaatg 1556625  T
Q  117 aattattgcatattgtgaacc 137  Q
     ||||||  |||||| |||||    
T  1556624 cattattttatattgagaacc 1556604  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 1597247 - 1597343
Alignment:
Q  17 atgaaaagtgtgtcacagagttttgtccgagagcttgcaccattaaacattccgttgagtgaaatttcagtgcagcaacttatgagtcaagaactca 113  Q
    |||||| |||||||||| |||||||||   |||||| ||||||||| |||||| |||||||||||||| ||||||||||| |||||| |||||||||    
T  1597247 atgaaacgtgtgtcacaaagttttgtcaccgagcttacaccattaagcattcctttgagtgaaatttccgtgcagcaactaatgagtgaagaactca 1597343  T

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Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 1540679 - 1540560
Alignment:
Q  17 atgaaaagtgtgtcacagagttttgtccgagagcttgcaccattaaacattccgttgagtgaaatttcagtgcagcaacttatgagtcaagaactcaaag 116  Q
    |||||| |||||||||| |||||||||   |||||| |||| || | |||||| |||||||||||||||||| ||||||| |||||| ||||||||||||    
T  1540679 atgaaacgtgtgtcacaaagttttgtcaccgagcttacaccgtttagcattcctttgagtgaaatttcagtggagcaactaatgagtgaagaactcaaag 1540580  T
Q  117 aattattgcatattgtgaac 136  Q
     ||||||  |||||| ||||    
T  1540579 cattattttatattgggaac 1540560  T

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Target: chr7; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 1106834 - 1106954
Alignment:
Q  17 atgaaaagtgtgtcacagagttttgtccgagagcttgcaccattaaacattccgttgagtgaaatttcagtgcagcaacttatgagtcaagaactcaaag 116  Q
    |||||| |||| ||||| |||||||||   |||||  ||||||||| |||||| |||||||||||||||||||| ||||| | | |||||||||| ||||    
T  1106834 atgaaacgtgtctcacaaagttttgtcacggagctcacaccattaagcattcctttgagtgaaatttcagtgcaacaactcacgggtcaagaactgaaag 1106933  T
Q  117 aattattgcatattgtgaacc 137  Q
     ||||||  |||||| |||||    
T  1106934 gattattttatattgggaacc 1106954  T

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Target: chr7; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 2322153 - 2322265
Alignment:
Q  17 atgaaaagtgtgtcacagagttttgtccgagagcttgcaccattaaacattccgttgagtgaaatttcagtgcagcaacttatgagtcaagaactcaaag 116  Q
    |||||| ||| |||||||||||||  |   || ||| ||||||||| |||||| |||||||||||||| ||||||||||| |||||||||||| | ||||    
T  2322153 atgaaatgtgcgtcacagagtttttccactgaacttacaccattaagcattcctttgagtgaaatttctgtgcagcaactgatgagtcaagaattaaaag 2322252  T
Q  117 aattattgcatat 129  Q
     |||||| |||||    
T  2322253 cattatttcatat 2322265  T

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Target: chr7; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 3954476 - 3954356
Alignment:
Q  17 atgaaaagtgtgtcacagagttttgtccgagagcttgcaccattaaacattccgttgagtgaaatttcagtgcagcaacttatgagtcaagaactcaaag 116  Q
    ||||||||||||||||| ||||||  |   ||| || ||||||||| |||||| ||||| |||||||||||| |||||||  ||| ||||||||||||||    
T  3954476 atgaaaagtgtgtcacaaagtttttccattgaggttacaccattaagcattcctttgagagaaatttcagtgaagcaactcgtgaatcaagaactcaaag 3954377  T
Q  117 aattattgcatattgtgaacc 137  Q
     |||||| || || |||||||    
T  3954376 cattatttcagatcgtgaacc 3954356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 1089494 - 1089600
Alignment:
Q  17 atgaaaagtgtgtcacagagttttgtccgagagcttgcaccattaaacattccgttgagtgaaatttcagtgcagcaacttatgagtcaagaactcaaag 116  Q
    |||||| |||||||||| ||||||| |   |||||  |||||||||  | ||| ||||||||||||||| ||||||||||  ||||||||||||||||||    
T  1089494 atgaaacgtgtgtcacaaagttttgccactgagctgacaccattaagaactcctttgagtgaaatttcaatgcagcaactcttgagtcaagaactcaaag 1089593  T
Q  117 aattatt 123  Q
     ||||||    
T  1089594 cattatt 1089600  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 1549867 - 1549784
Alignment:
Q  54 caccattaaacattccgttgagtgaaatttcagtgcagcaacttatgagtcaagaactcaaagaattattgcatattgtgaacc 137  Q
    |||||||||| | ||  ||||||||||||||| ||||||||||  ||||||||||||||||||  ||||| |||||||| ||||    
T  1549867 caccattaaaaactcttttgagtgaaatttcattgcagcaactcttgagtcaagaactcaaagcgttatttcatattgtaaacc 1549784  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 1563931 - 1563874
Alignment:
Q  66 ttccgttgagtgaaatttcagtgcagcaacttatgagtcaagaactcaaagaattatt 123  Q
    |||| |||||||||||||||||||||||||| |||||| |||||||| ||| ||||||    
T  1563931 ttcctttgagtgaaatttcagtgcagcaactaatgagtgaagaactcgaagcattatt 1563874  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 2326499 - 2326537
Alignment:
Q  73 gagtgaaatttcagtgcagcaacttatgagtcaagaact 111  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  2326499 gagtgaaatttcagtgcagcaactcatgagtcaagaact 2326537  T

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Target: scaffold0491 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 5331 - 5211
Alignment:
Q  17 atgaaaagtgtgtcacagagttttgtccgagagcttgcaccattaaacattccgttgagtgaaatttcagtgcagcaacttatgagtcaagaactcaaag 116  Q
    |||||| ||||||| || |||||||||   |||||| ||| |||||  ||||| || ||||||||||||||||||||||| |||||| ||||||||||||    
T  5331 atgaaatgtgtgtcgcaaagttttgtcaccgagcttccacgattaagtattcctttcagtgaaatttcagtgcagcaactaatgagtgaagaactcaaag 5232  T
Q  117 aattattgcatattgtgaacc 137  Q
     ||| ||  |||||| |||||    
T  5231 cattgttttatattgcgaacc 5211  T

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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 18748490 - 18748370
Alignment:
Q  17 atgaaaagtgtgtcacagagttttgtccgagagcttgcaccattaaacattccgttgagtgaaatttcagtgcagcaacttatgagtcaagaactcaaag 116  Q
    |||||| ||||||| || |||||||||   |||||| ||| |||||  ||||| || ||||||||||||||||||||||| |||||| ||||||||||||    
T  18748490 atgaaatgtgtgtcgcaaagttttgtcaccgagcttccacgattaagtattcctttcagtgaaatttcagtgcagcaactaatgagtgaagaactcaaag 18748391  T
Q  117 aattattgcatattgtgaacc 137  Q
     ||| ||  |||||| |||||    
T  18748390 cattgttttatattgcgaacc 18748370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 18738559 - 18738460
Alignment:
Q  17 atgaaaagtgtgtcacagagttttgtccgagagcttgcaccattaaacattccgttgagtgaaatttcagtgcagcaacttatgagtcaagaactcaaag 116  Q
    |||||| ||||||| || |||||||||   |||||| ||| |||||  ||||| || ||||||||||||||||||||||| |||||| ||||||| ||||    
T  18738559 atgaaatgtgtgtcgcaaagttttgtcaccgagcttccacgattaagtattcctttcagtgaaatttcagtgcagcaactaatgagtgaagaacttaaag 18738460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 18743523 - 18743424
Alignment:
Q  17 atgaaaagtgtgtcacagagttttgtccgagagcttgcaccattaaacattccgttgagtgaaatttcagtgcagcaacttatgagtcaagaactcaaag 116  Q
    |||||| ||||||| || |||||||||   |||||| ||| |||||  ||||| || ||||||||||||||||||||||| |||||| ||||||| ||||    
T  18743523 atgaaatgtgtgtcgcaaagttttgtcaccgagcttccacgattaagtattcctttcagtgaaatttcagtgcagcaactaatgagtgaagaacttaaag 18743424  T

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