View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_13 (Length: 485)
Name: NF6021_high_13
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Original strand, 2310876 - 2311335
Alignment:
| Q |
8 |
gagcagagaatagagaagtggactctgttgtagatgaaattcttggaggaaaaatattttaagaatttatgagcaatggctctgtttatgttgattattc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2310876 |
gagcagagaatagagaagtggactctgttgtagatgaaattcttggaggaaaaatattttaagaatttatgagcaatggctctgtttatgttaattattc |
2310975 |
T |
|
| Q |
108 |
ttccttatagtcatagataggttcatcaatcatgatataacttttctgttgatgcatctatcaactttgtaacattctattaatggccctgactatctaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
2310976 |
ttccttatagtcatagataggttcatcaatcatgatataacttttctgttgatgcatctatcaactttgtaacattctattaatggctctggctatctaa |
2311075 |
T |
|
| Q |
208 |
caatgatctgatatagcttttttctgtcctgcatctgctatgatctaatggtcccttctgtcattcaatgttgtctcattacatatatgcttatgcttgt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2311076 |
caatgatctgatatagcttttttctgtcctgcatctgctatgatctaatggtcccttctgtcattcaatgttgtctcattacatatatgcttatgcttgt |
2311175 |
T |
|
| Q |
308 |
tctcaacccactttattcacaatttgcaggtttgaatttgaagctgattacatcgggcttcaactaatggcagcagctggctatgatcctcgggtggcac |
407 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2311176 |
tctcaacccactttattcacaatttgcatgtttgaatttgaagctgattacatcgggcttcaactaatggcagcagctggctatgatcctcgggtggcac |
2311275 |
T |
|
| Q |
408 |
ctaaagtctacgaggagctgggaaagttaagcggacataacaatgattttatgtttacag |
467 |
Q |
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| T |
2311276 |
ctaaagtctacgaggagctgggaaagttaagcagacataacaatgattttatgtttacag |
2311335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 59 - 467
Target Start/End: Complemental strand, 2928337 - 2927935
Alignment:
| Q |
59 |
aaatattttaagaatttatgagcaatggctctgtttatgttgattattcttccttatagtcatagataggttcatcaatcat--gatataacttttctgt |
156 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| |||||||||| | ||| | ||| |||||| | |
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| T |
2928337 |
aaatattttaagaatttatgagcaatgactctgtttatgctacttattcttccttatag------ataggttcatga-tcagtggccttaagttttctat |
2928245 |
T |
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| Q |
157 |
tgatgcatctat--caactttgtaacattctattaatggccctgactatctaacaatgatctgatatagcttttttctgtcctgcatctgctatgatcta |
254 |
Q |
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|||||||||||| || |||||||||||||||||| |||||||||||| ||||||| ||| |||||||||||| ||||||||||| || |||| |
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| T |
2928244 |
tgatgcatctatatcacctttgtaacattctattac-------gactatctaacagtgatctggtatggcttttttctgtgctgcatctgctgtgttcta |
2928152 |
T |
|
| Q |
255 |
atggtcccttctgtcattcaatgttgtctcatt----acatatatgcttatgcttgttctcaacccactttattcacaatttgcaggtttgaatttgaag |
350 |
Q |
| |
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||||||| ||||||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2928151 |
atggtcctttctgtcattcaatgttgtcttctttgttacatatatgcttatgtttgttctcaacccaatttattcacaatttgcaggtttgaatttgaag |
2928052 |
T |
|
| Q |
351 |
ctgattacatcgggcttcaactaatggcagcagctggctatgatcctcgggtggcacctaaagtctacgaggagctgggaaagttaagcggacataacaa |
450 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928051 |
ctgattatatcgggcttctactaatggcagcagctggctatgatcctcgggtggctcctaaagtctacgaggagctgggaaagttaagcggacataacaa |
2927952 |
T |
|
| Q |
451 |
tgattttatgtttacag |
467 |
Q |
| |
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||||||||||||||||| |
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| T |
2927951 |
tgattttatgtttacag |
2927935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 10173789 - 10173717
Alignment:
| Q |
324 |
tcacaatttgcaggtttgaatttgaagctgattacatcgggcttcaactaatggcagcagctggctatgatcc |
396 |
Q |
| |
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||||||||| || || |||||||||||| |||||||| ||||||| |||||||||||| |||||||||||||| |
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| T |
10173789 |
tcacaatttacaagtgtgaatttgaagcggattacattgggcttctactaatggcagccgctggctatgatcc |
10173717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 301 - 396
Target Start/End: Complemental strand, 1238027 - 1237932
Alignment:
| Q |
301 |
tgcttgttctcaacccactttattcacaatttgcaggtttgaatttgaagctgattacatcgggcttcaactaatggcagcagctggctatgatcc |
396 |
Q |
| |
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||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||| |
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| T |
1238027 |
tgcttgttctcaatccaatttattcacaatttgcaggtttgaatttgaagcggattacattgggcttctactaatggcagcagttggctatgatcc |
1237932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 290 - 407
Target Start/End: Complemental strand, 29088970 - 29088853
Alignment:
| Q |
290 |
atatatgcttatgcttgttctcaacccactttattcacaatttgcaggtttgaatttgaagctgattacatcgggcttcaactaatggcagcagctggct |
389 |
Q |
| |
|
|||||| || |||||| ||||||| ||| | |||||||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||| ||||||||| |
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| T |
29088970 |
atatatactcatgcttattctcaatccaatgtattcacaatttgcagttttgaatttgaagttgattacattgggcttctactaatggcatcagctggct |
29088871 |
T |
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| Q |
390 |
atgatcctcgggtggcac |
407 |
Q |
| |
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||||||||||| |||||| |
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| T |
29088870 |
atgatcctcggctggcac |
29088853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 301 - 396
Target Start/End: Original strand, 1175414 - 1175509
Alignment:
| Q |
301 |
tgcttgttctcaacccactttattcacaatttgcaggtttgaatttgaagctgattacatcgggcttcaactaatggcagcagctggctatgatcc |
396 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |
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| T |
1175414 |
tgcttgttctcaacaaaatttattcacaatttgcaggtttgaatatgaagctgattacattgggcttctactgatggcagcagctggctatgatcc |
1175509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 417
Target Start/End: Complemental strand, 23906529 - 23906457
Alignment:
| Q |
345 |
ttgaagctgattacatcgggcttcaactaatggcagcagctggctatgatcctcgggtggcacctaaagtcta |
417 |
Q |
| |
|
|||||||||||||||| |||||| | || | ||| | |||||||||||||| |||||||||||||||||||| |
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|
| T |
23906529 |
ttgaagctgattacattcggcttctattacttgcatcggctggctatgatccccgggtggcacctaaagtcta |
23906457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 794438 - 794359
Alignment:
| Q |
304 |
ttgttctcaacccactttattcacaatttgcaggtttgaatttgaagctgattacatcgggcttcaactaatggcagcag |
383 |
Q |
| |
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|||||||||| ||| | |||||| |||||| ||||||||||||||| |||||||| |||||| |||||| ||||||| |
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|
| T |
794438 |
ttgttctcaatccaatatattcataatttgaaggtttgaatttgaatacgattacattgggcttatactaatcgcagcag |
794359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 43286855 - 43286784
Alignment:
| Q |
295 |
tgcttatgcttgttctcaacccactttatt-cacaatttgcaggtttgaatttgaagctgattacatcgggc |
365 |
Q |
| |
|
|||| |||| ||||||||||||| |||||| || |||||| ||| |||||||||||||||||||||| |||| |
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| T |
43286855 |
tgctcatgcctgttctcaacccaatttatttcataatttgtaggattgaatttgaagctgattacattgggc |
43286784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 432
Target Start/End: Original strand, 907789 - 907876
Alignment:
| Q |
345 |
ttgaagctgattacatcgggcttcaactaatggcagcagctggctatgatcctcgggtggcacctaaagtctacgaggagctgggaaa |
432 |
Q |
| |
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|||||||||||||||| || |||| | || ||||| | || || ||||| || || ||||||||||||||||||||| || ||||||| |
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| T |
907789 |
ttgaagctgattacattggtcttctattagtggcatctgccggttatgacccacgtgtggcacctaaagtctacgagaagttgggaaa |
907876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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