View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_15 (Length: 454)
Name: NF6021_high_15
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 33599326 - 33599751
Alignment:
| Q |
18 |
agcttgttcataaagggagttacatcagcctccaaagctgacatgtgtctaaatggatttttagccttgcaccaacaatatgtatcaaacataaaaggac |
117 |
Q |
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| T |
33599326 |
agcttgttcataaagggagttacatcagcctccaaagctgacatgtgtctaaatggatttttagccctgcaccaacaatatgtatcaaacataaaagggc |
33599425 |
T |
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| Q |
118 |
tt--cacaactaagagaaagagtagctattggttcagctatatcatcaagcctacgcagttttggcaaatgattttacagatagaacaatatgcaagaca |
215 |
Q |
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| T |
33599426 |
ttttcacaactaagagaaagagtagccattggttcagctatatcatcaagcctacgcagttttggcaaatgattttacagatagaacaatatgcaagaca |
33599525 |
T |
|
| Q |
216 |
atataataataatagctcagaaagctattgagatcatcatgttttggaatgttgctcatgaaaatctcaaccaacattagccacacctgtgttatgccaa |
315 |
Q |
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| T |
33599526 |
atataataataatagctcagaaagctattgagatcatcatgttttggaatgttactcatgaaaatctcaaccaacattagccacacctgtgttatgccaa |
33599625 |
T |
|
| Q |
316 |
aacacacctaatagagacataaaaactagccnnnnnnngcacctaacagagacttaaaacaagtgctcctgctgtccaaaccatcccccaaaaacaggcc |
415 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33599626 |
aacacacctaatagagacataaaaactagccaaaaaaagcacctaacagagacttaaaacaagtgctcctgctgtccaaaccatcccccaaaaacaggcc |
33599725 |
T |
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| Q |
416 |
ctccccattgacttcatgacacaggt |
441 |
Q |
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| T |
33599726 |
ctccccattgacttcatgatacaggt |
33599751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 44063173 - 44063090
Alignment:
| Q |
131 |
gaaagagtagctattggttcagctatatcatcaagcctacgcagttttggcaaatgattttacagatagaacaatatgcaagacaata |
218 |
Q |
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| T |
44063173 |
gaaagagcagctattggttcagctgtatcatcaagttta----gtttttgcaaatgatttcacagatagaacaatatggaagacaata |
44063090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 44063071 - 44063008
Alignment:
| Q |
218 |
ataataataatagctcagaaagctattgagatcatcatgttttggaatgttgctcatgaaaatc |
281 |
Q |
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| T |
44063071 |
ataataacaatagctaagaaagctatcgggttcatcatgttctggaatgttgctcatgaaaatc |
44063008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 46723348 - 46723425
Alignment:
| Q |
127 |
aagagaaagagtagctattggttcagctatatcatcaagcctacgcagttttggcaaatgattttacagatagaacaa |
204 |
Q |
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||||||||||| | ||||||||||| |||||||| ||||||| | | |||||| ||||||| |||||| ||||||| |
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| T |
46723348 |
aagagaaagagcggttattggttcagttatatcattaagcctatgtaattttggtaaatgatagtacagacagaacaa |
46723425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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