View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_17 (Length: 436)
Name: NF6021_high_17
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 10368290 - 10367887
Alignment:
| Q |
16 |
ataaaactatcttatcattgcttactgatcatgtgcattgatttcaatgctattgggtcgggtgcaagtgaatcgaattcgaaactgtatcgaaatccaa |
115 |
Q |
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| T |
10368290 |
ataaaactatcttatcattgcttactgatcatgtgcattgatttcaatgctattgggtcgggtgcaagtgaatcgaattcgaaactgtatcgaaatccaa |
10368191 |
T |
|
| Q |
116 |
cggctttcagtccatgtatgatccacaagatgaagctcaaataattttctaaccatagaatgttgtccattccaaaagcaactggaaatcacgaaaagtc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10368190 |
cggctttcagtccatgtatgatccacaagatgaagctcaaataattttctaaccatagaatgttgtccattccaaaagcaactggaaatcacgaaaagtc |
10368091 |
T |
|
| Q |
216 |
gtccatttcaagatacgagatgagggtggtatggattagcatatacatgagatgggaatggttgagatgtttgaattacaatccaaaaacctctttctat |
315 |
Q |
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| T |
10368090 |
gtccattacaagatacgagatgagggtggtatggattagcatatacatgagatgggaatggttgagatgtttgaattacaatccaaaaacctctttctat |
10367991 |
T |
|
| Q |
316 |
gtcatatgctgcaagcttttcattccttgaacaaacaaaaaacttgctcttacaaacagttccagaactaactcccccaaaatctaaaggcagactttgt |
415 |
Q |
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| T |
10367990 |
gtcatatgctgcaagcttttcattccttgaacaaacataaaacttggtcttacaaacagttccagaactaactcccccaaaatctaaaggaagactttgt |
10367891 |
T |
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| Q |
416 |
atat |
419 |
Q |
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|||| |
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| T |
10367890 |
atat |
10367887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 333
Target Start/End: Original strand, 54155219 - 54155266
Alignment:
| Q |
286 |
ttgaattacaatccaaaaacctctttctatgtcatatgctgcaagctt |
333 |
Q |
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| T |
54155219 |
ttgaattgcaatccagaaacctcgttctatgtcatatgctgcaagctt |
54155266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 337
Target Start/End: Complemental strand, 43658375 - 43658309
Alignment:
| Q |
271 |
gaatggttgagatgtttgaattacaatccaaaaacctctttctatgtcatatgctgcaagcttttca |
337 |
Q |
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||||||| || ||||||| ||| ||||||||||| || ||||||||||||| ||| ||||||||||| |
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| T |
43658375 |
gaatggtagatatgtttgtattgcaatccaaaaatctttttctatgtcatacgctacaagcttttca |
43658309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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