View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_25 (Length: 413)
Name: NF6021_high_25
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 398
Target Start/End: Original strand, 41573528 - 41573917
Alignment:
| Q |
12 |
atgaaaacacggaacttggtggcagatttcaacaaagaggctgtgagctgaggtttggagttaggttcagaggaatcaagctccaattgcacgaggttag |
111 |
Q |
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| T |
41573528 |
atgaaaacacggaacttggtggcagatttcaacaaagaggctgtgagctgaggtttggagttaggttcagaggaatcaagctccaattgcacgaggttag |
41573627 |
T |
|
| Q |
112 |
ggtcattggtggaaggagaaagcgtaaacctgaattcattaatatcagactcgtttgccttttcttcttcatcttcttcgggtacagtaagctctatgtc |
211 |
Q |
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| T |
41573628 |
ggtcattggtggaaggagaaagcgtaaacctgaattcattaatatcagactcgtttgccttttcttcttcatcttcttcgggtacagtaagctctatgtc |
41573727 |
T |
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| Q |
212 |
aaagaaaggttcgccttcatcttcttcgtcagtggtttcgatgtcatgagtgtcttcttcctccgtagcaggaa---gaggaggaggtgagggcagtgga |
308 |
Q |
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| T |
41573728 |
aaagaaaggttcgccttcatcttcttcgtcagtggtttcgatgtcatgagtgtcttcttcctccgtagcaggaagaggaggaggaggtgagggaagtgga |
41573827 |
T |
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| Q |
309 |
agttgaggtgtttcacctgcagttggtttccaggatttgagcaaggtaaaagcttccatggttggaagaggaaatgaaatggttgtttgt |
398 |
Q |
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| T |
41573828 |
agttgaggtgtttcacctgcagttggtttccaggatttgagcaaggtaaaagcttccatggttggaagaggaaatgaaatggctgtttgt |
41573917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 15787242 - 15787367
Alignment:
| Q |
27 |
ttggtggcagatttcaacaaagaggctgtgagctgaggtttggagttaggttcagaggaatcaagctccaattgcacgaggttagggtcattggtggaag |
126 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
15787242 |
ttggaggcagatttcaacaaagaggttgtgagctgaggtttggagttaggttcagaggaatcaagctctaattgcaggaggttagggtcattggtggaag |
15787341 |
T |
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| Q |
127 |
gagaaagcgtaaacctgaattcatta |
152 |
Q |
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| T |
15787342 |
gagaaagcgtaaacctaaattcatta |
15787367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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