View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_high_27 (Length: 410)

Name: NF6021_high_27
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_high_27
NF6021_high_27
[»] chr8 (1 HSPs)
chr8 (19-311)||(40472707-40472999)


Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 40472707 - 40472999
Alignment:
Q  19 atagagaggtgaggatgatatacattgattttgtgggttgcaaattttccttttcacattcttcattgtcttatcgttgatctagcccgagttgtgttgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40472707 atagagaggtgaggatgatatacattgattttgtgggttgcaaattttccttttcacattcttcattgtcttatcgttgatctagcccgagttgtgttgc 40472806  T
Q  119 aaattacgagcttttagaataagatagagtggtgtgtgacatttaaaatgaaacaaattttcttctctaagggaagttgcttgttaattaacacttcagc 218  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40472807 aaattacgagcttttagaataagatagagtggtgtatgacatttaaaatgaaacaaattttcttctccaagggaagttgcttgttaattaacacttcagc 40472906  T
Q  219 ttgttaattaccactaatatacttcatccaatcatttttagttgtcgttttgggccttgtacaatgaccaaaataatcaatattcttagaatg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40472907 ttgttaattaccactaatatacttcatccaatcatttttagttgtcgttttgggccttgtacaatgaccaaaataatcaatattcttagaatg 40472999  T

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