View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_29 (Length: 405)
Name: NF6021_high_29
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 30965845 - 30966063
Alignment:
| Q |
17 |
aatatggaattggcaaagctaatatgattatccctttatggcttgatgcaagactttatcctaaatttttcagtgacattctggttgattctgttttaaa |
116 |
Q |
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| T |
30965845 |
aatatggaattggcaaagctaatatgattattcctt-atggcttgatgcaagactttatcctaaatttttcagtgacattctgattgattctgttttaaa |
30965943 |
T |
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| Q |
117 |
aaatgaaatgcagtagatactttctgttnnnnnnnttataaaaatactcttgatattannnnnnnacaaataaaattataaactggttgtgagtttctcc |
216 |
Q |
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| T |
30965944 |
aaatgaaatgcagtggatactttctgtt-aaaaaattataaaaatactcttgatattatttttttacaaataaaattataaactggttgtgagtttctcc |
30966042 |
T |
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| Q |
217 |
attggataatggtgccatgaa |
237 |
Q |
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| T |
30966043 |
attggataatggtgccatgaa |
30966063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 235 - 332
Target Start/End: Original strand, 30966087 - 30966183
Alignment:
| Q |
235 |
gaagcagaaacaaaaacacaacaatacaagaaagaatatagagccacaataaatcctcgaacccaaaaagaatcaccgttagtcaacagctacattta |
332 |
Q |
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| T |
30966087 |
gaagcagaaacaaaaacacaacaatacaagaaagaatatagagccacgataaatcctcgaa-ccaaaaagaatcaccgttagtcaacagttacattta |
30966183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 372
Target Start/End: Original strand, 30967620 - 30967661
Alignment:
| Q |
331 |
taacatttctttcactgttacatgttaattcttgatcaagct |
372 |
Q |
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| T |
30967620 |
taacatttctttcaccgttacatgttaattcttgatcaagct |
30967661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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