View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_3 (Length: 798)
Name: NF6021_high_3
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 262 - 783
Target Start/End: Complemental strand, 3308580 - 3308059
Alignment:
| Q |
262 |
tgggttgtttccaatcaaaaacggagaatgaagaagccataacaagttgtaaagaccgtcattacttcatgaaacaggcggttgccgcccgtaacaactt |
361 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308580 |
tgggttgtttccaatcaaaaatggagaatgaagaagccataacaagttgtaaagaccgtcattacttcatgaaacaggcggttgccgcccgtaacaactt |
3308481 |
T |
|
| Q |
362 |
cgcggctgcgcattcctcctacgccgcctcactcaagaacaccggcgcggctctcatagattttgcacaaggagaacaacaacaaaatcttttattctct |
461 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308480 |
cgcggctgcgcattcctcctacgcagcctcactcaagaacaccggcgcggctctcatagattttgcacaaggagaacaacaacaaaatcttttattctct |
3308381 |
T |
|
| Q |
462 |
ccttcttatgatgttcctttgcctcctcctcctcttcctgatttgcctgctgctctccggcgtgctattaccatgccggagtttgaatcagacatggttg |
561 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308380 |
ccttcttatgatgttcctttgcctcctcctcctcttcctgatttgcctgctgctctccggcgtgctattaccatgccggagtttgaatcagacatggttg |
3308281 |
T |
|
| Q |
562 |
tggaagaggaagaggatggtgatggtgatgaagaagttgttggaagagtgaaagagagagtgaatatggatatgattcaagtgttgagtgaagttgataa |
661 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308280 |
tggaagaggaagaggatggtgatggtgatgaagaagttgttggaagagtgaaagagagagtgaatatggatatgattcaagtgttgagtgaagttgataa |
3308181 |
T |
|
| Q |
662 |
tcattttataatggcttctgaagctgctcgcggtgtttctgtgattcttcaggctactcgtcttcactttcattcaaatttttctgatactgctagaggt |
761 |
Q |
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| T |
3308180 |
tcattttataatggcttctgaagctgctcgcggtgtttctgtgattcttcaggctactcgtcttcactttcattcaaatttttctgatactgctagaggt |
3308081 |
T |
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| Q |
762 |
aaccacaaaaatccatgttcat |
783 |
Q |
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|||||||||||||||||||||| |
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| T |
3308080 |
aaccacaaaaatccatgttcat |
3308059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 3308843 - 3308616
Alignment:
| Q |
1 |
ccaaaacggcatcgttttgttaccttaacgtctacgtagttggaatccatgctttacaactttgcttttctactttgatacacctagaaagttcatattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308843 |
ccaaaacggcatcgttttgttaccttaacgtctacgtagttggaatccatgctttacaactttgcttttctactttgatacacctagaaagttcatattc |
3308744 |
T |
|
| Q |
101 |
tctctccttttccaagcaataacattctccactaatacggcatcgtttcattgccttgacactgaagctttcaacccttccacactatcacgcacgttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
3308743 |
tctctccttttccaagcaataacattctccactaatacggcatcgtttcattgccttgacactgaagctttcaacccttccacactatgacacacgttaa |
3308644 |
T |
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| Q |
201 |
gcactagccttcaatattcaacaatttc |
228 |
Q |
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||||| |||||| ||| ||||||||||| |
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| T |
3308643 |
gcactggccttctatactcaacaatttc |
3308616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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