View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_high_30 (Length: 400)
Name: NF6021_high_30
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_high_30 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 7 - 400
Target Start/End: Original strand, 40903511 - 40903904
Alignment:
| Q |
7 |
gggagggggtgagtacattgacaatgtgaaagttattcttcagcaggcacaaaacatgaactccacattcagcgtaggtaatagcgtagtagaaaagaaa |
106 |
Q |
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| T |
40903511 |
gggagggggtgagtacattgactatgtgaaagttattcttcagcaggcacaaaacatgaactccacattcagcgtaggtaatagcgtagtagaaaagaaa |
40903610 |
T |
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| Q |
107 |
aagaaacaagtactacaatcattctgacaaaagtttcccaaaggcattgacaatggctttcagtagagcgaaaagaggaatggattccttttttgcagaa |
206 |
Q |
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| T |
40903611 |
aagaaacaagtactacaatcattctgacaaaagtttcccaaaggcattgacaatggctttcagtagagcgaaaagaggaatggattccttttttgcagaa |
40903710 |
T |
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| Q |
207 |
ttcttggatcttccatcccatgactctctgcagtgaaaccatttgaaaggacaagttagctgttgagagaaaaccaatttaattaactttacttcattaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40903711 |
ttcttggatcttccatcccatgactctctgcagtgaaaccatttgaaaggacaagttagctgttgagagaaaaccaatttaattaactttacttcattaa |
40903810 |
T |
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| Q |
307 |
actaaatggcacactatttgagatcaaatcgtttagatatgcttacagattgatcctatctacagttgtgttgattctcctctgggaactgcca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40903811 |
actaaatggcacactatttgagatcaaatcgtttagatatgcttacagattgatcctatctacagttgtgttgattctcctctgggaactgcca |
40903904 |
T |
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